Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8051E06.3 |
| Conread position: | 108-416 |
| Cow position: | chr17:22452263-22451955 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 269, 264 |
| Conread position: | 110-359 |
| Cow position: | chr17:22473454-22473703 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 100, 89 |
| Conread position: | 110-418 |
| Cow position: | chr17:22551892-22551584 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 303, 298 |
| Conread position: | 110-418 |
| Cow position: | chr17:22552984-22552676 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 194 |
| Conread position: | 110-418 |
| Cow position: | chr17:22589562-22589254 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 180, 170 |
| Conread position: | 112-354 |
| Cow position: | chr17:22551722-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-406 |
| Cow position: | chr17:41440833-41440539 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-417 |
| Cow position: | chr17:22590064-22589761 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 262, 255 |
| Conread position: | 112-424 |
| Cow position: | chr17:22552394-22552082 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 112-424 |
| Cow position: | chr17:22552814-22552502 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 112-431 |
| Cow position: | chr17:22552898-22552577 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 112-454 |
| Cow position: | chr17:22552646-22552300 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 301, 296 |
| Conread position: | 120-365 |
| Cow position: | chr17:22590140-22589895 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 120-366 |
| Cow position: | chr17:22473547-22473794 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 84 |
| Conread position: | 121-367 |
| Cow position: | chr17:22589467-22589221 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 78 |
| Conread position: | 121-404 |
| Cow position: | chr17:22589971-22589688 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 121-417 |
| Cow position: | chr17:22552133-22551839 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 121-418 |
| Cow position: | chr17:22552049-22551752 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 98, 103 |
| Conread position: | 121-424 |
| Cow position: | chr17:22553141-22552838 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 292, 287 |
| Conread position: | 121-424 |
| Cow position: | chr17:22590223-22589920 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 98, 103 |
| Conread position: | 121-425 |
| Cow position: | chr17:22552217-22551913 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 287 |
| Conread position: | 121-425 |
| Cow position: | chr17:22552721-22552417 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 292, 287 |
| Conread position: | 121-425 |
| Cow position: | chr17:22553057-22552753 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 188, 182 |
| Conread position: | 121-427 |
| Cow position: | chr17:22552553-22552247 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 187, 181 |
| Conread position: | 123-404 |
| Cow position: | chr17:22551795-22551514 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 190 |
| Conread position: | 123-427 |
| Cow position: | chr17:22552467-22552163 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 285 |
| Conread position: | 124-398 |
| Cow position: | chr17:22499177-22498903 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 175, 159 |
| Conread position: | 124-417 |
| Cow position: | chr17:22499093-22498802 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 124-424 |
| Cow position: | chr17:22473384-22473684 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 174, 159 |
| Conread position: | 129-404 |
| Cow position: | chr17:22452410-22452135 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-406 |
| Cow position: | chr17:41440564-41440287 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-425 |
| Cow position: | chr17:41440479-41440184 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 247, 238 |
| Conread position: | 130-427 |
| Cow position: | chr17:22452157-22451860 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-417 |
| Cow position: | chr17:22552288-22552007 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 174, 170 |
| Conread position: | 137-404 |
| Cow position: | chr17:22452066-22451799 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 138-406 |
| Cow position: | chr17:22452317-22452049 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-374 |
| Cow position: | chr17:22451980-22451745 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 139-424 |
| Cow position: | chr17:22589701-22589416 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-441 |
| Cow position: | chr17:22499330-22499029 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 290, 0 |
| Conread position: | 147-435 |
| Cow position: | chr17:41441050-41440762 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-405 |
| Cow position: | chr17:41440965-41440708 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 99 |
| Conread position: | 148-418 |
| Cow position: | chr17:22473660-22473931 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 149-406 |
| Cow position: | chr17:41440628-41440371 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-416 |
| Cow position: | chr17:44468021-44468286 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-424 |
| Cow position: | chr17:22473327-22473600 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 226, 216 |
| Conread position: | 151-454 |
| Cow position: | chr17:22589857-22589550 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 157-417 |
| Cow position: | chr17:22589599-22589341 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 119, 127 |
| Conread position: | 160-427 |
| Cow position: | chr17:22499393-22499126 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-373 |
| Cow position: | chr17:41441118-41440908 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-418 |
| Cow position: | chr17:22553166-22552928 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.