Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8051E06.3 |
| Conread position: | 109-418 |
| Cow position: | chr19:23596984-23597290 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 166, 49 |
| Conread position: | 110-417 |
| Cow position: | chr19:14959205-14958904 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 110-424 |
| Cow position: | chr19:14940026-14940339 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 110-424 |
| Cow position: | chr19:14940613-14940927 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-424 |
| Cow position: | chr19:14960354-14960042 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 112-430 |
| Cow position: | chr19:23649677-23649997 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 117-427 |
| Cow position: | chr19:23597072-23597383 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 83 |
| Conread position: | 120-423 |
| Cow position: | chr19:23613395-23613698 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 121-366 |
| Cow position: | chr19:14948418-14948174 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 174, 15 |
| Conread position: | 121-417 |
| Cow position: | chr19:23613816-23614110 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 203, 211 |
| Conread position: | 121-423 |
| Cow position: | chr19:23613984-23614286 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-423 |
| Cow position: | chr19:23614488-23614790 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 270, 266 |
| Conread position: | 121-424 |
| Cow position: | chr19:14940288-14940591 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 292, 287 |
| Conread position: | 122-424 |
| Cow position: | chr19:20635332-20635030 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 124-365 |
| Cow position: | chr19:20635414-20635173 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 163, 168 |
| Conread position: | 124-366 |
| Cow position: | chr19:14959113-14958871 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-404 |
| Cow position: | chr19:14948332-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 179, 189 |
| Conread position: | 124-404 |
| Cow position: | chr19:23649437-23649717 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-406 |
| Cow position: | chr19:23614155-23614437 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-417 |
| Cow position: | chr19:23614239-23614530 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 182, 159 |
| Conread position: | 124-417 |
| Cow position: | chr19:23614827-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 124-417 |
| Cow position: | chr19:43570173-43569882 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 174, 164 |
| Conread position: | 124-418 |
| Cow position: | chr19:20678254-20678548 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 124-423 |
| Cow position: | chr19:20677666-20677965 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 289, 284 |
| Conread position: | 124-423 |
| Cow position: | chr19:23613567-23613866 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-427 |
| Cow position: | chr19:14940459-14940762 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-366 |
| Cow position: | chr19:23650030-23650267 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 174, 185 |
| Conread position: | 129-405 |
| Cow position: | chr19:23649610-23649886 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-417 |
| Cow position: | chr19:23649526-23649812 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 129-418 |
| Cow position: | chr19:14960085-14959798 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 129-418 |
| Cow position: | chr19:23649358-23649647 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-423 |
| Cow position: | chr19:23649778-23650072 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-424 |
| Cow position: | chr19:20677839-20678134 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-404 |
| Cow position: | chr19:23597254-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-418 |
| Cow position: | chr19:14940549-14940837 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-423 |
| Cow position: | chr19:14940213-14940506 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 165, 177 |
| Conread position: | 130-423 |
| Cow position: | chr19:14960250-14959959 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 130-427 |
| Cow position: | chr19:23597338-23597635 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 136-365 |
| Cow position: | chr19:20678434-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 178, 148 |
| Conread position: | 137-303 |
| Cow position: | chr19:14940892-14941058 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-404 |
| Cow position: | chr19:14940390-14940655 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 149 |
| Conread position: | 139-406 |
| Cow position: | chr19:23597431-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 238, 228 |
| Conread position: | 139-406 |
| Cow position: | chr19:23613498-23613765 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 161, 168 |
| Conread position: | 139-406 |
| Cow position: | chr19:23649872-23650139 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 139-406 |
| Cow position: | chr19:23650208-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 139-417 |
| Cow position: | chr19:23614758-23615034 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 139-423 |
| Cow position: | chr19:23613918-23614202 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 274, 269 |
| Conread position: | 139-423 |
| Cow position: | chr19:23614086-23614370 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-423 |
| Cow position: | chr19:43570242-43569958 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 238, 229 |
| Conread position: | 145-365 |
| Cow position: | chr19:14940144-14940364 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-417 |
| Cow position: | chr19:14960153-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-424 |
| Cow position: | chr19:23596936-23597212 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 232, 97 |
| Conread position: | 145-427 |
| Cow position: | chr19:23596852-23597131 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 145-427 |
| Cow position: | chr19:23650130-23650412 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 152, 162 |
| Conread position: | 147-427 |
| Cow position: | chr19:20635560-20635279 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 5, 248 |
| Conread position: | 147-427 |
| Cow position: | chr19:23597187-23597467 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 266, 261 |
| Conread position: | 148-416 |
| Cow position: | chr19:23614431-23614699 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-404 |
| Cow position: | chr19:14948471-14948220 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 229, 13 |
| Conread position: | 151-366 |
| Cow position: | chr19:20678365-20678580 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 125, 134 |
| Conread position: | 151-418 |
| Cow position: | chr19:23649968-23650235 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 142, 156 |
| Conread position: | 151-419 |
| Cow position: | chr19:14959575-14959307 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-424 |
| Cow position: | chr19:23613762-23614035 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 153-418 |
| Cow position: | chr19:14959657-14959392 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 156-423 |
| Cow position: | chr19:14939987-14940254 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-424 |
| Cow position: | chr19:14960387-14960126 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 43 |
Show alignments to all cow chromosomes.