Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8051E06.3 |
| Conread position: | 105-423 |
| Cow position: | chr22:12385636-12385318 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 193, 14 |
| Conread position: | 110-366 |
| Cow position: | chr22:14429766-14430021 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 110-407 |
| Cow position: | chr22:12399052-12398756 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 110-418 |
| Cow position: | chr22:11640809-11641117 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 277, 282 |
| Conread position: | 110-418 |
| Cow position: | chr22:11641145-11641453 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 110-418 |
| Cow position: | chr22:12476102-12475794 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 126, 120 |
| Conread position: | 111-418 |
| Cow position: | chr22:11640642-11640949 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 112-321 |
| Cow position: | chr22:12418654-12418445 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 162, 177 |
| Conread position: | 120-424 |
| Cow position: | chr22:12431359-12431055 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-404 |
| Cow position: | chr22:12475587-12475304 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 265, 270 |
| Conread position: | 121-406 |
| Cow position: | chr22:12458563-12458277 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 121-416 |
| Cow position: | chr22:12499672-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 156, 167 |
| Conread position: | 121-417 |
| Cow position: | chr22:12399378-12399084 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 121-427 |
| Cow position: | chr22:11641072-11641378 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 264, 271 |
| Conread position: | 121-435 |
| Cow position: | chr22:12431778-12431464 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-336 |
| Cow position: | chr22:11641243-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 90 |
| Conread position: | 124-415 |
| Cow position: | chr22:12418726-12418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 124-416 |
| Cow position: | chr22:12432363-12432073 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 124-423 |
| Cow position: | chr22:12399795-12399496 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 124-427 |
| Cow position: | chr22:12418810-12418507 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-404 |
| Cow position: | chr22:12385196-12384917 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-424 |
| Cow position: | chr22:12475834-12475536 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-424 |
| Cow position: | chr22:12499593-12499891 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 126-427 |
| Cow position: | chr22:12385279-12384978 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 127-427 |
| Cow position: | chr22:12399120-12398820 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-374 |
| Cow position: | chr22:12476000-12475754 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 196, 207 |
| Conread position: | 128-416 |
| Cow position: | chr22:12431603-12431315 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 128-423 |
| Cow position: | chr22:12432023-12431728 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-424 |
| Cow position: | chr22:12431855-12431559 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-417 |
| Cow position: | chr22:12431266-12430980 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 146, 152 |
| Conread position: | 129-417 |
| Cow position: | chr22:12458470-12458183 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 258, 262 |
| Conread position: | 129-423 |
| Cow position: | chr22:12399538-12399244 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 129-427 |
| Cow position: | chr22:12431518-12431220 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-392 |
| Cow position: | chr22:12432441-12432179 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-395 |
| Cow position: | chr22:12476250-12475985 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-406 |
| Cow position: | chr22:12499009-12499285 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-416 |
| Cow position: | chr22:12418888-12418602 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-423 |
| Cow position: | chr22:12385445-12385150 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 185 |
| Conread position: | 130-423 |
| Cow position: | chr22:12399201-12398908 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 173, 179 |
| Conread position: | 130-427 |
| Cow position: | chr22:12476166-12475869 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-422 |
| Cow position: | chr22:12431432-12431141 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-427 |
| Cow position: | chr22:11666589-11666883 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 134-435 |
| Cow position: | chr22:11641001-11641302 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 138-366 |
| Cow position: | chr22:12431677-12431449 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 139, 152 |
| Conread position: | 138-406 |
| Cow position: | chr22:12475906-12475638 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 157, 169 |
| Conread position: | 138-406 |
| Cow position: | chr22:12499353-12499621 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 157, 169 |
| Conread position: | 138-423 |
| Cow position: | chr22:12458125-12457840 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-424 |
| Cow position: | chr22:12431929-12431643 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 139-366 |
| Cow position: | chr22:11666679-11666906 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 139-417 |
| Cow position: | chr22:12399444-12399168 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 139-423 |
| Cow position: | chr22:12399696-12399412 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 139-424 |
| Cow position: | chr22:12499438-12499723 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-427 |
| Cow position: | chr22:11701333-11701621 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 140-424 |
| Cow position: | chr22:12458627-12458343 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 145-366 |
| Cow position: | chr22:11701423-11701644 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 156, 151 |
| Conread position: | 147-422 |
| Cow position: | chr22:11640762-11641037 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-418 |
| Cow position: | chr22:46654173-46654440 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 151-423 |
| Cow position: | chr22:12399600-12399328 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 140, 132 |
| Conread position: | 151-427 |
| Cow position: | chr22:14468051-14468327 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 152-423 |
| Cow position: | chr22:12385337-12385066 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-423 |
| Cow position: | chr22:12476392-12476125 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-423 |
| Cow position: | chr22:12498867-12499134 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 162-360 |
| Cow position: | chr22:11701104-11701302 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 132 |
| Conread position: | 162-423 |
| Cow position: | chr22:11666450-11666711 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 200, 216 |
| Conread position: | 168-424 |
| Cow position: | chr22:12419018-12418762 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 184-418 |
| Cow position: | chr22:46654038-46654272 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 15 |
Show alignments to all cow chromosomes.