Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8051E06.3 |
| Conread position: | 108-424 |
| Cow position: | chr28:7757868-7758184 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 281, 277 |
| Conread position: | 109-344 |
| Cow position: | chr28:7810708-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-416 |
| Cow position: | chr28:9298683-9298989 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 269, 131 |
| Conread position: | 109-417 |
| Cow position: | chr28:7758525-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 271, 250 |
| Conread position: | 109-417 |
| Cow position: | chr28:9253304-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-424 |
| Cow position: | chr28:9298850-9299163 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 304, 142 |
| Conread position: | 109-427 |
| Cow position: | chr28:7757785-7758103 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 282, 278 |
| Conread position: | 110-415 |
| Cow position: | chr28:9299255-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 296, 0 |
| Conread position: | 110-418 |
| Cow position: | chr28:7757534-7757842 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 277 |
| Conread position: | 110-424 |
| Cow position: | chr28:7757702-7758016 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 303, 298 |
| Conread position: | 110-424 |
| Cow position: | chr28:9252969-9253283 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 110-427 |
| Cow position: | chr28:7757954-7758271 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 195, 191 |
| Conread position: | 111-323 |
| Cow position: | chr28:7758123-7758335 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 111-418 |
| Cow position: | chr28:7810383-7810681 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 263, 145 |
| Conread position: | 112-406 |
| Cow position: | chr28:9298604-9298895 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 189, 63 |
| Conread position: | 112-415 |
| Cow position: | chr28:34696032-34696333 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 112-423 |
| Cow position: | chr28:11333849-11333538 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 301, 296 |
| Conread position: | 112-424 |
| Cow position: | chr28:7757620-7757932 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-424 |
| Cow position: | chr28:7810543-7810855 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 301, 294 |
| Conread position: | 112-424 |
| Cow position: | chr28:9298770-9299079 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 121-344 |
| Cow position: | chr28:7810309-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-365 |
| Cow position: | chr28:9290133-9290373 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 75 |
| Conread position: | 121-406 |
| Cow position: | chr28:7757461-7757746 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-417 |
| Cow position: | chr28:7758453-7758747 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 232, 225 |
| Conread position: | 121-417 |
| Cow position: | chr28:9252895-9253190 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 187 |
| Conread position: | 121-418 |
| Cow position: | chr28:9253064-9253361 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 121-424 |
| Cow position: | chr28:7810636-7810939 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-427 |
| Cow position: | chr28:9253232-9253538 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-463 |
| Cow position: | chr28:7758049-7758391 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 123-418 |
| Cow position: | chr28:11333670-11333381 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 124-413 |
| Cow position: | chr28:34696296-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-415 |
| Cow position: | chr28:34695960-34696251 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 125-424 |
| Cow position: | chr28:9290053-9290348 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 72 |
| Conread position: | 129-336 |
| Cow position: | chr28:33210449-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 129-416 |
| Cow position: | chr28:33210365-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 195, 271 |
| Conread position: | 130-406 |
| Cow position: | chr28:11333747-11333471 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-418 |
| Cow position: | chr28:9253157-9253445 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 283, 278 |
| Conread position: | 134-435 |
| Cow position: | chr28:34695886-34696187 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 66 |
| Conread position: | 135-423 |
| Cow position: | chr28:34696139-34696427 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-427 |
| Cow position: | chr28:34696223-34696515 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-361 |
| Cow position: | chr28:11333908-11333684 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 139-372 |
| Cow position: | chr28:9290481-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 139-424 |
| Cow position: | chr28:7758387-7758672 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 147-406 |
| Cow position: | chr28:33210299-33210558 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 240, 245 |
| Conread position: | 151-364 |
| Cow position: | chr28:9290410-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 154-406 |
| Cow position: | chr28:9298561-9298812 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 157-423 |
| Cow position: | chr28:7757413-7757679 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-423 |
| Cow position: | chr28:9299218-9299484 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-424 |
| Cow position: | chr28:7757351-7757596 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-424 |
| Cow position: | chr28:7810527-7810771 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 110, 104 |
| Conread position: | 180-596 |
| Cow position: | chr28:7810284-7810716 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 264, 349 |
Show alignments to all cow chromosomes.