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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8051I23.5
        

               
Conread position:
               
1-167
               

               
Cow position:
               
chrX:30455745-30455576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chrX:23039112-23038941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
142, 93
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chrX:15122289-15122115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chrX:23279898-23280070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chrX:22492906-22493081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chrX:23452576-23452400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chrX:31201712-31201888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
142, 135
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chrX:27591152-27590971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:322787-322967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:864979-865159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:1549836-1550018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
142, 135
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:2299766-2299939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:2479757-2479575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:4906116-4905934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:5354429-5354249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:5375405-5375224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:9095514-9095696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:11950899-11950717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:16702542-16702724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:16710827-16711009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:18193561-18193743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:21389448-21389631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
5, 80
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:21414737-21414920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 80
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:21832757-21832939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
80, 71
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:22869690-22869872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 83
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:23387662-23387480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:23395478-23395660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:24588863-24588681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:26530844-26531026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:26622934-26622755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
88, 53
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:26755768-26755586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:27318102-27318284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:28633583-28633401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
144, 135
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:29099290-29099470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:29482865-29482683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:29880408-29880224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:29916475-29916293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:30181053-30180871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:32145385-32145202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:31803760-31803947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:41059373-41059560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
69, 77
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chrX:2145848-2146038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
136, 155
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chrX:2185105-2185287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chrX:3581805-3581997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 166
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chrX:4300065-4299877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
140, 67
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chrX:20503514-20503706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
2-131
               

               
Cow position:
               
chrX:37840020-37840149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
2-141
               

               
Cow position:
               
chrX:721731-721869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 78
               

               
Conread position:
               
2-162
               

               
Cow position:
               
chrX:24260502-24260340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
141, 132
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chrX:8640660-8640823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 132
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chrX:34760938-34761101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chrX:11744142-11744316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chrX:11976573-11976399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chrX:29912213-29912387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
139, 134
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chrX:8435326-8435152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 92
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chrX:25289807-25289632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chrX:25292207-25292032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chrX:26275011-26275186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chrX:36535857-36535682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:5289812-5289636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:5320841-5320666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:5360882-5361058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:5866018-5866194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:6201405-6201580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:7754778-7754954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:9228030-9227853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:10528912-10528736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:18463223-18463399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:20800661-20800837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:21892380-21892556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:22077468-22077292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-176
               

               
Cow position:
               
chrX:30090170-30089994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chrX:8104634-8104457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 132
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chrX:24483490-24483312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chrX:29287870-29288047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:6372052-6372232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:15260743-15260567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:24109729-24109552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:24321756-24321576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:27595353-27595174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:38998713-38998891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
155, 132
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:42222897-42222717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:42732744-42732924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 78
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:672119-671940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
141, 79
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:2047984-2048165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:2103277-2103458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:2382338-2382519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:2579293-2579472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:3360694-3360874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:3372980-3372799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:4623081-4622900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:4767571-4767749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
133, 101
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:6580807-6580988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:6656145-6655965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 32
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:6854841-6854665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:7096331-7096512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:8482320-8482500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:11146462-11146280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:11462121-11461940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:12307890-12307709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:12997038-12996857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:13415570-13415389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:14050321-14050140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
141, 132
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:14125373-14125191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 135
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:14801946-14801766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 132
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:15621659-15621478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:16087251-16087070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:16278528-16278709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 78
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:16360135-16359954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:16465179-16465360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:16525663-16525843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:16803994-16803814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 91
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:16808941-16808761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 91
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:17054440-17054621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:17782372-17782553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:17889979-17889800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
133, 98
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:18024120-18023939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:18488842-18488661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:18656933-18656752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:19398650-19398831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:19474276-19474095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:20357127-20356946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:20674740-20674921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 77
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:20741725-20741906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:21343268-21343448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:21685493-21685672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:21767672-21767853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:21793462-21793643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:22564812-22564630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:22612275-22612456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:22616499-22616318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:23342119-23341938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
140, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:24345921-24346102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:24468251-24468070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:24734536-24734717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:24769984-24769803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:26230886-26230705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:26617996-26618177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:27029003-27029183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 77
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:27304803-27304982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 79
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:27754300-27754481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:27758581-27758762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:28132973-28133153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 73
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:28647397-28647216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:29170909-29170728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:29225350-29225531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:30053596-30053415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 132
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:30200120-30199939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
140, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:30836259-30836440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:31495609-31495790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:31978967-31978788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:32129649-32129830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:32329074-32329262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:35532728-35532908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
139, 114
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:37487823-37488004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:38231395-38231214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:38961978-38961797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:39548271-39548452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 134
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:39560788-39560606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:40693859-40693679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:41847657-41847476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 133
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chrX:44193564-44193383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 125
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chrX:28624882-28624706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
2-184
               

               
Cow position:
               
chrX:39697640-39697822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 106
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chrX:8400672-8400487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 98
               

               
Conread position:
               
3-141
               

               
Cow position:
               
chrX:30286279-30286416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
69, 77
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chrX:7177588-7177767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:9127928-9128108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
140, 133
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:23572945-23572764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 80
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:25451209-25451391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
91, 76
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:30172832-30172653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 72
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:37080641-37080462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
140, 111
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chrX:23236915-23237151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
4-161
               

               
Cow position:
               
chrX:5426965-5427124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chrX:15590555-15590382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chrX:26442376-26442201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chrX:15151790-15151611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chrX:27977958-27977780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:4342626-4342804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:5647230-5647051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:6453572-6453750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 74
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:7120481-7120660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:7551927-7551748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:7572265-7572444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:9169731-9169552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:9899462-9899284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
66, 79
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:11409460-11409281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:12144973-12145152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:13406412-13406233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:15349339-15349160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:15978077-15977900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:16035634-16035455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 130
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:16085784-16085605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:16854491-16854312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
138, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:18950862-18950683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:21582317-21582496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:24292792-24292610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:24444181-24444002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:25817943-25817764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:28879706-28879528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:29930518-29930339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:30435744-30435565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:30965112-30964933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:31728341-31728520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:32064293-32064115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
139, 126
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:32643360-32643539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:34094580-34094759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:36194970-36195149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:36729258-36729437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:37186756-37186932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:39713425-39713604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chrX:41156186-41156364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chrX:24310224-24310040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
140, 5
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chrX:27423397-27423205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 132
               

               
Conread position:
               
5-176
               

               
Cow position:
               
chrX:6235972-6235800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chrX:5298365-5298187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
138, 131
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chrX:12185974-12186151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chrX:30229237-30229060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 79
               

               
Conread position:
               
8-181
               

               
Cow position:
               
chrX:18243871-18244044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
8-190
               

               
Cow position:
               
chrX:35028146-35028328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
12-181
               

               
Cow position:
               
chrX:38852045-38852214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 152
               

               
Conread position:
               
13-180
               

               
Cow position:
               
chrX:20792025-20792191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 50
               

               
Conread position:
               
14-181
               

               
Cow position:
               
chrX:8590464-8590634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 65
               

               
Conread position:
               
20-170
               

               
Cow position:
               
chrX:27628726-27628880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-190
               

               
Cow position:
               
chrX:34553646-34553820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 116
               

               
Conread position:
               
21-181
               

               
Cow position:
               
chrX:17290073-17290236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 116
               

               
Conread position:
               
21-190
               

               
Cow position:
               
chrX:13056927-13057090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
120, 82
               

               
Conread position:
               
21-190
               

               
Cow position:
               
chrX:21500606-21500770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
22-181
               

               
Cow position:
               
chrX:9642540-9642379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 114
               

               
Conread position:
               
22-181
               

               
Cow position:
               
chrX:22579495-22579334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
120, 114
               

               
Conread position:
               
22-181
               

               
Cow position:
               
chrX:33685023-33685184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 114
               

               
Conread position:
               
22-181
               

               
Cow position:
               
chrX:39556896-39556734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
36-181
               

               
Cow position:
               
chrX:38228410-38228264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
84-636
               

               
Cow position:
               
chrX:35383906-35383377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
135-759
               

               
Cow position:
               
chrX:6026775-6026157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
183-505
               

               
Cow position:
               
chrX:20674835-20675157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
183-592
               

               
Cow position:
               
chrX:1789208-1789620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
188-761
               

               
Cow position:
               
chrX:3951837-3952408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
189-514
               

               
Cow position:
               
chrX:13057004-13057343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 65
               

               
Conread position:
               
189-582
               

               
Cow position:
               
chrX:21389550-21389954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
189-626
               

               
Cow position:
               
chrX:23314830-23314393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
46, 149
               

               
Conread position:
               
189-680
               

               
Cow position:
               
chrX:13178634-13178117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
189-687
               

               
Cow position:
               
chrX:20503615-20504130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
189-710
               

               
Cow position:
               
chrX:21832858-21833376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
189-717
               

               
Cow position:
               
chrX:27628810-27629364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 195
               

               
Conread position:
               
189-722
               

               
Cow position:
               
chrX:35028238-35028760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
189-740
               

               
Cow position:
               
chrX:30229140-30228577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 179
               

               
Conread position:
               
189-761
               

               
Cow position:
               
chrX:3082161-3081573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
189-761
               

               
Cow position:
               
chrX:5289712-5289129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
189-761
               

               
Cow position:
               
chrX:18455797-18455225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
189-761
               

               
Cow position:
               
chrX:24310127-24309561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
189-761
               

               
Cow position:
               
chrX:38852135-38852717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
189-762
               

               
Cow position:
               
chrX:44193464-44192884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
189-768
               

               
Cow position:
               
chrX:14782373-14781779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
189-768
               

               
Cow position:
               
chrX:24468151-24467558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
189-768
               

               
Cow position:
               
chrX:29912313-29912906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 118
               

               
Conread position:
               
189-768
               

               
Cow position:
               
chrX:35532828-35533418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
189-768
               

               
Cow position:
               
chrX:38961878-38961279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
189-768
               

               
Cow position:
               
chrX:39731166-39730573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
190-346
               

               
Cow position:
               
chrX:9911390-9911546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
190-372
               

               
Cow position:
               
chrX:6656045-6655864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
190-394
               

               
Cow position:
               
chrX:12996937-12996732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
190-486
               

               
Cow position:
               
chrX:20733548-20733845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
190-486
               

               
Cow position:
               
chrX:20792112-20792407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 178
               

               
Conread position:
               
190-495
               

               
Cow position:
               
chrX:3155608-3155305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
190-495
               

               
Cow position:
               
chrX:27070820-27071124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 174
               

               
Conread position:
               
190-510
               

               
Cow position:
               
chrX:31803862-31804180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
38, 125
               

               
Conread position:
               
190-536
               

               
Cow position:
               
chrX:3581910-3582278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
190-548
               

               
Cow position:
               
chrX:4406856-4407210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
190-561
               

               
Cow position:
               
chrX:26230785-26230403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-566
               

               
Cow position:
               
chrX:20357026-20356635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-581
               

               
Cow position:
               
chrX:33685104-33685506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-587
               

               
Cow position:
               
chrX:40070630-40070229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
190-588
               

               
Cow position:
               
chrX:29916373-29915964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-590
               

               
Cow position:
               
chrX:21414840-21415251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-590
               

               
Cow position:
               
chrX:22539060-22538649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 128
               

               
Conread position:
               
190-590
               

               
Cow position:
               
chrX:35024042-35024439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
190-592
               

               
Cow position:
               
chrX:8482421-8482825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-592
               

               
Cow position:
               
chrX:11462020-11461610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
190-592
               

               
Cow position:
               
chrX:11499801-11499397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 114
               

               
Conread position:
               
190-592
               

               
Cow position:
               
chrX:16808841-16808428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-593
               

               
Cow position:
               
chrX:21793563-21793978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-603
               

               
Cow position:
               
chrX:12345869-12346293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-617
               

               
Cow position:
               
chrX:29700968-29700543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
190-618
               

               
Cow position:
               
chrX:30681526-30681092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 16
               

               
Conread position:
               
190-621
               

               
Cow position:
               
chrX:10059439-10059880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
190-621
               

               
Cow position:
               
chrX:15977980-15977538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-621
               

               
Cow position:
               
chrX:19608649-19609091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
190-622
               

               
Cow position:
               
chrX:2008724-2008294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
190-626
               

               
Cow position:
               
chrX:13205928-13206372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-626
               

               
Cow position:
               
chrX:41791746-41791292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-628
               

               
Cow position:
               
chrX:29099392-29099838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-639
               

               
Cow position:
               
chrX:12307789-12307321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-641
               

               
Cow position:
               
chrX:24279890-24280341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-651
               

               
Cow position:
               
chrX:32145282-32144820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-651
               

               
Cow position:
               
chrX:38228343-38227864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 159
               

               
Conread position:
               
190-652
               

               
Cow position:
               
chrX:19650517-19650063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 102
               

               
Conread position:
               
190-660
               

               
Cow position:
               
chrX:24588761-24588283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-667
               

               
Cow position:
               
chrX:14125271-14124782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-674
               

               
Cow position:
               
chrX:22077367-22076871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-675
               

               
Cow position:
               
chrX:27754401-27754901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-679
               

               
Cow position:
               
chrX:8807563-8807068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 181
               

               
Conread position:
               
190-680
               

               
Cow position:
               
chrX:15306900-15306396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
46, 188
               

               
Conread position:
               
190-681
               

               
Cow position:
               
chrX:20363163-20362672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
190-687
               

               
Cow position:
               
chrX:17889879-17889394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
190-687
               

               
Cow position:
               
chrX:22869792-22870295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-701
               

               
Cow position:
               
chrX:39352637-39352146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
190-703
               

               
Cow position:
               
chrX:2048085-2048610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-710
               

               
Cow position:
               
chrX:29759663-29760194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-714
               

               
Cow position:
               
chrX:2813510-2812971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
190-714
               

               
Cow position:
               
chrX:11409361-11408823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-714
               

               
Cow position:
               
chrX:16087150-16086612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-714
               

               
Cow position:
               
chrX:32643459-32643997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-714
               

               
Cow position:
               
chrX:37404256-37403725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-714
               

               
Cow position:
               
chrX:39548372-39548909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
190-722
               

               
Cow position:
               
chrX:7551828-7551284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 181
               

               
Conread position:
               
190-728
               

               
Cow position:
               
chrX:23452474-23451920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
190-729
               

               
Cow position:
               
chrX:24170340-24169781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
190-734
               

               
Cow position:
               
chrX:11976472-11975916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
190-738
               

               
Cow position:
               
chrX:2500657-2500096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-738
               

               
Cow position:
               
chrX:5248363-5248918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:7572364-7572916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:14462293-14462845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:16040706-16040144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:16782255-16782816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:23022291-23022849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:23280000-23280543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:23342018-23341457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:25451309-25451858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 109
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:30164263-30163703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
190-739
               

               
Cow position:
               
chrX:30180951-30180390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:16702644-16703208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:18193663-18194227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:21226452-21227011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:21582416-21582979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:21592266-21592824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:27318204-27318768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:30165689-30165139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:31201814-31202377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-740
               

               
Cow position:
               
chrX:42222796-42222251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-744
               

               
Cow position:
               
chrX:16465280-16465841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-744
               

               
Cow position:
               
chrX:29908229-29907661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-745
               

               
Cow position:
               
chrX:2382439-2383008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 161
               

               
Conread position:
               
190-748
               

               
Cow position:
               
chrX:47000680-47000107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:322887-323471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:1549938-1550503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:2479655-2479071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:5354327-5353747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:16710929-16711511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 180
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:23039011-23038441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:23387560-23386983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:23395580-23396162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:24292690-24292123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 180
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:26755666-26755073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:27977859-27977275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:38150662-38151244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-759
               

               
Cow position:
               
chrX:41156285-41156867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-760
               

               
Cow position:
               
chrX:27451072-27450489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 86
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:1617260-1616680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:2299868-2300438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:2649377-2648804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:4906014-4905432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:5320741-5320161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:5332458-5331879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:5334840-5334261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:7276935-7277491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:7810019-7809451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:10438932-10438381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:10528811-10528216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:12310412-12309828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:13928769-13928195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:14050220-14049636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:16278629-16279207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:16360034-16359451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:18247330-18247902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:20800762-20801330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 181
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:21658522-21659091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:22887635-22888216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:23986223-23986806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:24174977-24174396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:26508206-26508795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:26760595-26760010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:27095110-27095677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:27304902-27305485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 179
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:27983378-27982814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:28633481-28632919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:28753363-28752782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:28879608-28879048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:29083040-29083636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:30090069-30089494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:30160016-30159437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:31261660-31261078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:34442455-34441889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:36839686-36840261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 152
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:37852111-37852697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:41847555-41846976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-761
               

               
Cow position:
               
chrX:42732845-42733424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
190-762
               

               
Cow position:
               
chrX:14801845-14801259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
190-762
               

               
Cow position:
               
chrX:42380867-42380282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
190-766
               

               
Cow position:
               
chrX:6453670-6454259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:672020-671442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:2103378-2103972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:2579392-2579986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:3360794-3361388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:3372879-3372286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:3418163-3417571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:3465101-3464509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 104
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:4342724-4343316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:4622980-4622387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:5280879-5280286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:5647131-5646537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:5866119-5866713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:6372153-6372748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:6580908-6581501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:6870590-6869996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:7096432-7097025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:7754879-7755468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:8435226-8434637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:8640761-8641355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:9011304-9011894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:9128028-9128623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:9169632-9169047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:9642459-9641865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:9899363-9898773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:10440858-10440275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:11146361-11145770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:12145072-12145662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:12359861-12360455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:13406313-13405730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:15260642-15260052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:15621558-15620965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 128
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:17054541-17055136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:17663941-17663351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:17891519-17892110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:17994435-17995026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:18243966-18244549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:18656832-18656238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:19398751-19399345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:19474175-19473593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 127
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:20020554-20021144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:20652390-20652965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:21343368-21343961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:21685592-21686186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:21767773-21768371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:22493007-22493574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:22564710-22564120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:22612376-22612953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:24413000-24413597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:24483389-24482803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:25289706-25289112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:26275112-26275706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:26530946-26531526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 174
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:27423298-27422714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:27591050-27590466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:27615787-27616371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:27758682-27759274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:28503309-28503903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:28587945-28588538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:29225451-29226045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:29849650-29849064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:30053495-30052902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:30059860-30060455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 179
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:30172733-30172141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:30200019-30199425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:30836360-30836940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:31495710-31496303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:31728440-31729025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:31978867-31978274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:32584957-32584365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:33804013-33803454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:34761039-34761633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:35608967-35609553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:36195069-36195659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:36535756-36535168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:36729357-36729951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:37080541-37079952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:38231294-38230700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:39185146-39185740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
190-768
               

               
Cow position:
               
chrX:39560686-39560085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
191-651
               

               
Cow position:
               
chrX:13430812-13430347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
191-711
               

               
Cow position:
               
chrX:16035534-16035004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
191-715
               

               
Cow position:
               
chrX:34993161-34993683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 31
               

               
Conread position:
               
191-739
               

               
Cow position:
               
chrX:23134565-23135112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
191-759
               

               
Cow position:
               
chrX:10410114-10409531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
37, 175
               

               
Conread position:
               
191-761
               

               
Cow position:
               
chrX:41734209-41733637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
191-762
               

               
Cow position:
               
chrX:10413001-10412412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 172
               

               
Conread position:
               
191-768
               

               
Cow position:
               
chrX:18488740-18488147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
191-768
               

               
Cow position:
               
chrX:26442276-26441693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
192-592
               

               
Cow position:
               
chrX:29892061-29892472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
192-618
               

               
Cow position:
               
chrX:28666983-28666540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
192-768
               

               
Cow position:
               
chrX:14597822-14598413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
196-399
               

               
Cow position:
               
chrX:2185205-2185405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 168
               

               
Conread position:
               
196-461
               

               
Cow position:
               
chrX:19212111-19211842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
196-483
               

               
Cow position:
               
chrX:23222052-23221777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
196-486
               

               
Cow position:
               
chrX:3144609-3144899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
196-507
               

               
Cow position:
               
chrX:26436711-26437015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
196-511
               

               
Cow position:
               
chrX:28133079-28133392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
196-555
               

               
Cow position:
               
chrX:8400570-8400216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
196-573
               

               
Cow position:
               
chrX:26447077-26447446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
244, 33
               

               
Conread position:
               
196-585
               

               
Cow position:
               
chrX:28557345-28557731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
196-592
               

               
Cow position:
               
chrX:8590559-8590968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
196-592
               

               
Cow position:
               
chrX:41305250-41304845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
196-593
               

               
Cow position:
               
chrX:11991172-11990764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
163, 40
               
UCSC Genome Browser

               
Conread position:
               
196-596
               

               
Cow position:
               
chrX:16325551-16325139 (view  custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 170
               
UCSC Genome Browser

               
               
               
Conread position:
196-626

               
               
               
Cow position:
chrX:22819057-22819475 (view  custom track)

               
               
               
Alignm length:
437

               
               
               
Alignm identity:
294

               
               
               
Alignm E-value:
4.06377e-44

               
               
               
Alignm gaps (pig, cow):
28, 100
UCSC Genome Browser

               
               
               
Conread position:
196-626

               
               
               
Cow position:
chrX:36691817-36692254 (view  custom track)

               
               
               
Alignm length:
450

               
               
               
Alignm identity:
314

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
34, 27

               
               
               Conread position:196-649
               
               
               Cow position:chrX:12465019-12465475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:196-651
               
               
               Cow position:chrX:16525769-16526237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-651
               
               
               Cow position:chrX:29790836-29790373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:321
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-652
               
               
               Cow position:chrX:23572838-23572369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-675
               
               
               Cow position:chrX:5841293-5841765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 146

               
               
               Conread position:196-715
               
               
               Cow position:chrX:40693753-40693219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:196-739
               
               
               Cow position:chrX:23586793-23587335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:339
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:196-739
               
               
               Cow position:chrX:40225255-40224707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-740
               
               
               Cow position:chrX:13069757-13069208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:196-740
               
               
               Cow position:chrX:13090318-13089769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:196-740
               
               
               Cow position:chrX:42954422-42954964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:196-748
               
               
               Cow position:chrX:39556808-39556250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:196-749
               
               
               Cow position:chrX:34553737-34554282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:196-758
               
               
               Cow position:chrX:34221737-34222306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-758
               
               
               Cow position:chrX:39713530-39714106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-759
               
               
               Cow position:chrX:12178653-12179230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-759
               
               
               Cow position:chrX:20953512-20954084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-759
               
               
               Cow position:chrX:22810868-22811442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-759
               
               
               Cow position:chrX:30455637-30455066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:196-761
               
               
               Cow position:chrX:6406335-6406904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:196-761
               
               
               Cow position:chrX:22102772-22102216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:363
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:196-761
               
               
               Cow position:chrX:23218058-23218632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:196-761
               
               
               Cow position:chrX:34008754-34009302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-761
               
               
               Cow position:chrX:46296641-46297218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-765
               
               
               Cow position:chrX:164885-165450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:375
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):171, 28

               
               
               Conread position:196-766
               
               
               Cow position:chrX:20999288-20998713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:196-768
               
               
               Cow position:chrX:1056408-1055825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:196-768
               
               
               Cow position:chrX:2559981-2559393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-768
               
               
               Cow position:chrX:10445436-10444848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-768
               
               
               Cow position:chrX:17782479-17783066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-768
               
               
               Cow position:chrX:24769877-24769293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-768
               
               
               Cow position:chrX:25282514-25281923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 172

               
               
               Conread position:196-768
               
               
               Cow position:chrX:28518741-28518154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:196-768
               
               
               Cow position:chrX:29942138-29942717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:197-737
               
               
               Cow position:chrX:37105179-37105703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:344
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):103, 118

               
               
               Conread position:198-599
               
               
               Cow position:chrX:33583674-33584081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:198-714
               
               
               Cow position:chrX:6279624-6279095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:198-739
               
               
               Cow position:chrX:1794205-1793633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 172

               
               
               Conread position:198-759
               
               
               Cow position:chrX:18950755-18950184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:198-761
               
               
               Cow position:chrX:6044470-6043931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:198-761
               
               
               Cow position:chrX:20974048-20974609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:362
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:198-761
               
               
               Cow position:chrX:22330569-22330019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 96

               
               
               Conread position:198-761
               
               
               Cow position:chrX:25405389-25404799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:198-768
               
               
               Cow position:chrX:15140550-15139981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:199-465
               
               
               Cow position:chrX:4767678-4767940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:199-715
               
               
               Cow position:chrX:5649419-5648875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:355
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:199-732
               
               
               Cow position:chrX:17610473-17609930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 166

               
               
               Conread position:200-486
               
               
               Cow position:chrX:15993428-15993715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:200-590
               
               
               Cow position:chrX:28867032-28866633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:200-680
               
               
               Cow position:chrX:40560552-40560068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:200-748
               
               
               Cow position:chrX:44901127-44901689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:369
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:200-768
               
               
               Cow position:chrX:2486649-2486063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:201-761
               
               
               Cow position:chrX:11744254-11744826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:201-761
               
               
               Cow position:chrX:24109620-24109049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:202-511
               
               
               Cow position:chrX:35287410-35287722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:202-650
               
               
               Cow position:chrX:43789833-43789393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:202-761
               
               
               Cow position:chrX:24889137-24888577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:368
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:204-620
               
               
               Cow position:chrX:23326815-23326411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:204-713
               
               
               Cow position:chrX:37959614-37960112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:342
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:204-717
               
               
               Cow position:chrX:46930065-46929555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:204-766
               
               
               Cow position:chrX:18768910-18769463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:205-504
               
               
               Cow position:chrX:21626710-21626406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:208-651
               
               
               Cow position:chrX:23974446-23973995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:209-739
               
               
               Cow position:chrX:3649827-3649272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:364
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:209-768
               
               
               Cow position:chrX:44874506-44873967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:355
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 160

               
               
               Conread position:210-740
               
               
               Cow position:chrX:28624767-28624222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:210-768
               
               
               Cow position:chrX:39939757-39939187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:211-761
               
               
               Cow position:chrX:10866867-10866309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:216-622
               
               
               Cow position:chrX:24231883-24232294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:216-768
               
               
               Cow position:chrX:30196299-30196864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 146

               
               
               Conread position:218-761
               
               
               Cow position:chrX:28079806-28080344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:367
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 152

               
               
               Conread position:221-760
               
               
               Cow position:chrX:1947938-1947402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:221-768
               
               
               Cow position:chrX:21254782-21255343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:229-479
               
               
               Cow position:chrX:3396989-3396744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):177, 27

               
               
               Conread position:231-419
               
               
               Cow position:chrX:158626-158814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:231-606
               
               
               Cow position:chrX:24826024-24826404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 161

               
               
               Conread position:231-618
               
               
               Cow position:chrX:31933881-31933489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):147, 25

               
               
               Conread position:231-626
               
               
               Cow position:chrX:21063491-21063891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:231-641
               
               
               Cow position:chrX:30086284-30085873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 30

               
               
               Conread position:231-733
               
               
               Cow position:chrX:39559337-39558835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:231-761
               
               
               Cow position:chrX:3211520-3210988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 117

               
               
               Conread position:231-761
               
               
               Cow position:chrX:4481983-4482509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 47

               
               
               Conread position:231-761
               
               
               Cow position:chrX:17158791-17158270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 19

               
               
               Conread position:231-766
               
               
               Cow position:chrX:37117925-37118465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:342
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):118, 137

               
               
               Conread position:231-768
               
               
               Cow position:chrX:11074167-11073644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 102

               
               
               Conread position:231-768
               
               
               Cow position:chrX:22125839-22125300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 136

               
               
               Conread position:231-768
               
               
               Cow position:chrX:29842162-29841602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 99

               
               
               Conread position:231-768
               
               
               Cow position:chrX:38330400-38330949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 136

               
               
               Conread position:232-740
               
               
               Cow position:chrX:24202054-24202563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:343
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:232-740
               
               
               Cow position:chrX:44053833-44054341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:348
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):88, 136

               
               
               Conread position:232-761
               
               
               Cow position:chrX:6766717-6766187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:233-471
               
               
               Cow position:chrX:9402724-9402490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):173, 81

               
               
               Conread position:235-760
               
               
               Cow position:chrX:19929456-19929986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:235-761
               
               
               Cow position:chrX:33822111-33822656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:238-522
               
               
               Cow position:chrX:20790519-20790234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 131

               
               
               Conread position:243-666
               
               
               Cow position:chrX:19877846-19878279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:253-626
               
               
               Cow position:chrX:23415657-23415275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:253-739
               
               
               Cow position:chrX:19880040-19880527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:258-768
               
               
               Cow position:chrX:16021332-16020818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 66

               
               
               Conread position:261-680
               
               
               Cow position:chrX:17793901-17794306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:276-761
               
               
               Cow position:chrX:4751299-4750814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 16

               
               
               Conread position:278-761
               
               
               Cow position:chrX:40365681-40365186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 16

               
               
               Conread position:282-761
               
               
               Cow position:chrX:7805449-7805934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:283-738
               
               
               Cow position:chrX:29876990-29876526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:284-761
               
               
               Cow position:chrX:8516667-8517162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:284-761
               
               
               Cow position:chrX:23969423-23969915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 83

               
               
               Conread position:285-761
               
               
               Cow position:chrX:31372532-31373021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 82

               
               
               Conread position:285-768
               
               
               Cow position:chrX:6543335-6543824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 62

               
               
               Conread position:285-768
               
               
               Cow position:chrX:27704669-27705160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:286-511
               
               
               Cow position:chrX:45024080-45024306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:286-670
               
               
               Cow position:chrX:4498706-4499098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:286-671
               
               
               Cow position:chrX:38793434-38793817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):222, 81

               
               
               Conread position:286-703
               
               
               Cow position:chrX:12102891-12102462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:286-761
               
               
               Cow position:chrX:10301199-10301678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:286-761
               
               
               Cow position:chrX:37795400-37794923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:326
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:287-761
               
               
               Cow position:chrX:3406271-3405798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:287-761
               
               
               Cow position:chrX:4995683-4996173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:288-668
               
               
               Cow position:chrX:42466921-42466559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):226, 79

               
               
               Conread position:288-761
               
               
               Cow position:chrX:45400946-45400481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:316
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):120, 79

               
               
               Conread position:289-767
               
               
               Cow position:chrX:23928099-23927620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:315
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):120, 25

               
               
               Conread position:289-768
               
               
               Cow position:chrX:24508937-24509434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 117

               
               
               Conread position:290-678
               
               
               Cow position:chrX:3121822-3121421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:290-767
               
               
               Cow position:chrX:509069-508594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:294-768
               
               
               Cow position:chrX:2790312-2790804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:325
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:296-761
               
               
               Cow position:chrX:37363792-37364275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:321
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):60, 118

               
               
               Conread position:298-761
               
               
               Cow position:chrX:37832376-37831915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 39

               
               
               Conread position:298-768
               
               
               Cow position:chrX:40268564-40269043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:299-740
               
               
               Cow position:chrX:865480-865933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:300-589
               
               
               Cow position:chrX:37134548-37134254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:300-675
               
               
               Cow position:chrX:24442154-24441767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):111, 67

               
               
               Conread position:300-759
               
               
               Cow position:chrX:11950401-11949937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:300-759
               
               
               Cow position:chrX:18898564-18898095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:300-759
               
               
               Cow position:chrX:35239957-35240420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:306-625
               
               
               Cow position:chrX:11817731-11818054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:306-704
               
               
               Cow position:chrX:5667943-5667543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:308-740
               
               
               Cow position:chrX:21318776-21319213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:308-761
               
               
               Cow position:chrX:4408650-4409117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 59

               
               
               Conread position:308-761
               
               
               Cow position:chrX:41527421-41526953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 59

               
               
               Conread position:309-620
               
               
               Cow position:chrX:35829670-35829352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:309-621
               
               
               Cow position:chrX:23269109-23268797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:309-740
               
               
               Cow position:chrX:24006735-24006287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):58, 67

               
               
               Conread position:309-761
               
               
               Cow position:chrX:13912187-13912651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):97, 58

               
               
               Conread position:309-761
               
               
               Cow position:chrX:30354488-30354948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 58

               
               
               Conread position:310-761
               
               
               Cow position:chrX:11405790-11406235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:311-740
               
               
               Cow position:chrX:28156628-28157071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:311-768
               
               
               Cow position:chrX:41879833-41879363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:313-768
               
               
               Cow position:chrX:34034435-34034893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:319
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:314-620
               
               
               Cow position:chrX:19595027-19595339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:314-626
               
               
               Cow position:chrX:39293119-39292798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:314-730
               
               
               Cow position:chrX:4299856-4299449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:314-739
               
               
               Cow position:chrX:40384155-40384582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:314-739
               
               
               Cow position:chrX:40601228-40601655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:314-758
               
               
               Cow position:chrX:5392476-5392020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:314-759
               
               
               Cow position:chrX:14162291-14162747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:314-761
               
               
               Cow position:chrX:5124260-5123801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:314-761
               
               
               Cow position:chrX:19109942-19109483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 53

               
               
               Conread position:314-761
               
               
               Cow position:chrX:34518825-34519284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:314-761
               
               
               Cow position:chrX:45236565-45237024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:314-768
               
               
               Cow position:chrX:2159864-2160332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:314-768
               
               
               Cow position:chrX:2293501-2293033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:314-768
               
               
               Cow position:chrX:11566013-11566481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:314-768
               
               
               Cow position:chrX:13031112-13030644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 53

               
               
               Conread position:314-768
               
               
               Cow position:chrX:15113771-15114238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:314-768
               
               
               Cow position:chrX:16046246-16046714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:314-768
               
               
               Cow position:chrX:18222513-18222980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 48

               
               
               Conread position:314-768
               
               
               Cow position:chrX:18462873-18462408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:314-768
               
               
               Cow position:chrX:28313524-28313992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:314-768
               
               
               Cow position:chrX:36479536-36479068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 53

               
               
               Conread position:315-584
               
               
               Cow position:chrX:31379054-31379333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:315-656
               
               
               Cow position:chrX:6659632-6659982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:315-736
               
               
               Cow position:chrX:303605-304023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:315-761
               
               
               Cow position:chrX:11855265-11855727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:315-761
               
               
               Cow position:chrX:14459068-14458609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:315-761
               
               
               Cow position:chrX:17902390-17901947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:315-768
               
               
               Cow position:chrX:29722331-29722779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:317
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:316-625
               
               
               Cow position:chrX:25204437-25204754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 51

               
               
               Conread position:316-725
               
               
               Cow position:chrX:677998-677573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:317-768
               
               
               Cow position:chrX:15091662-15091202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 50

               
               
               Conread position:318-682
               
               
               Cow position:chrX:25847904-25848281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 49

               
               
               Conread position:318-729
               
               
               Cow position:chrX:2607608-2608020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 54

               
               
               Conread position:319-709
               
               
               Cow position:chrX:29875894-29875490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:319-740
               
               
               Cow position:chrX:5639817-5639400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:319-768
               
               
               Cow position:chrX:30688189-30688632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:320-710
               
               
               Cow position:chrX:44018809-44019204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:320-768
               
               
               Cow position:chrX:8529645-8530107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 48

               
               
               Conread position:321-709
               
               
               Cow position:chrX:15340750-15340352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:321-758
               
               
               Cow position:chrX:23317305-23316865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:321-761
               
               
               Cow position:chrX:2323813-2324263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:321-761
               
               
               Cow position:chrX:45903283-45903735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:323-687
               
               
               Cow position:chrX:19556127-19556498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:323-767
               
               
               Cow position:chrX:2248241-2247780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:323-768
               
               
               Cow position:chrX:26974018-26974477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:324-740
               
               
               Cow position:chrX:25459530-25459101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:324-761
               
               
               Cow position:chrX:44366915-44367333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):176, 38

               
               
               Conread position:325-714
               
               
               Cow position:chrX:45658967-45658569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:325-761
               
               
               Cow position:chrX:13800707-13800267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:325-761
               
               
               Cow position:chrX:38935532-38935984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 42

               
               
               Conread position:325-768
               
               
               Cow position:chrX:5406171-5406626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:326-695
               
               
               Cow position:chrX:40581052-40580671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:326-767
               
               
               Cow position:chrX:6089259-6088817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:304
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):203, 15

               
               
               Conread position:326-768
               
               
               Cow position:chrX:22601299-22600847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:328-761
               
               
               Cow position:chrX:20131765-20131332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 104

               
               
               Conread position:328-768
               
               
               Cow position:chrX:17265923-17265485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:330-738
               
               
               Cow position:chrX:1729742-1729327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:331-625
               
               
               Cow position:chrX:24425399-24425096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:331-652
               
               
               Cow position:chrX:43649165-43648862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:331-739
               
               
               Cow position:chrX:39701970-39702384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:333-761
               
               
               Cow position:chrX:20032713-20032273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:333-767
               
               
               Cow position:chrX:8104162-8103739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:334-603
               
               
               Cow position:chrX:9535886-9536157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:334-761
               
               
               Cow position:chrX:9837251-9837676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 26

               
               
               Conread position:335-649
               
               
               Cow position:chrX:34237898-34238220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:336-768
               
               
               Cow position:chrX:29170221-29169774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:338-761
               
               
               Cow position:chrX:30422012-30421590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:339-739
               
               
               Cow position:chrX:19657622-19658033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:339-761
               
               
               Cow position:chrX:35847350-35847774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):70, 8

               
               
               Conread position:340-592
               
               
               Cow position:chrX:5293716-5293462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):148, 22

               
               
               Conread position:340-739
               
               
               Cow position:chrX:22604312-22603902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:340-761
               
               
               Cow position:chrX:37488854-37489284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:340-768
               
               
               Cow position:chrX:37815716-37816156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:342-744
               
               
               Cow position:chrX:42042259-42041854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:343-761
               
               
               Cow position:chrX:12095457-12095027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:345-768
               
               
               Cow position:chrX:13071450-13071037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:345-768
               
               
               Cow position:chrX:13092010-13091597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:347-761
               
               
               Cow position:chrX:3096621-3096197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:347-761
               
               
               Cow position:chrX:25198581-25198997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:347-762
               
               
               Cow position:chrX:24174029-24173606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:347-768
               
               
               Cow position:chrX:2932586-2932153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 20

               
               
               Conread position:347-768
               
               
               Cow position:chrX:16688400-16688835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:349-761
               
               
               Cow position:chrX:16552942-16553353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:350-768
               
               
               Cow position:chrX:2274055-2274484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:352-745
               
               
               Cow position:chrX:22871257-22871654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:353-761
               
               
               Cow position:chrX:33827901-33827491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:354-626
               
               
               Cow position:chrX:7444045-7444327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:354-768
               
               
               Cow position:chrX:30751915-30752341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:355-768
               
               
               Cow position:chrX:30824788-30825215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:363-621
               
               
               Cow position:chrX:3596610-3596878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 40

               
               
               Conread position:363-676
               
               
               Cow position:chrX:21667156-21666838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:363-768
               
               
               Cow position:chrX:5892375-5892795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 40

               
               
               Conread position:363-768
               
               
               Cow position:chrX:30139637-30139217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 40

               
               
               Conread position:363-768
               
               
               Cow position:chrX:34253376-34253796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 40

               
               
               Conread position:365-739
               
               
               Cow position:chrX:160579-160964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):44, 165

               
               
               Conread position:366-761
               
               
               Cow position:chrX:38140887-38140482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:371-626
               
               
               Cow position:chrX:6673534-6673796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:375-740
               
               
               Cow position:chrX:30144124-30143747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:375-768
               
               
               Cow position:chrX:20742152-20742553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:375-768
               
               
               Cow position:chrX:27996810-27997217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:375-768
               
               
               Cow position:chrX:33763504-33763911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:375-768
               
               
               Cow position:chrX:34719673-34720080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:377-700
               
               
               Cow position:chrX:7177831-7178160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:379-739
               
               
               Cow position:chrX:42539768-42540135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:379-761
               
               
               Cow position:chrX:11083443-11083052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 174

               
               
               Conread position:379-768
               
               
               Cow position:chrX:20878604-20878195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:380-739
               
               
               Cow position:chrX:39387266-39386895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):28, 228

               
               
               Conread position:380-744
               
               
               Cow position:chrX:32419347-32419704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:380-761
               
               
               Cow position:chrX:32182861-32182478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:380-761
               
               
               Cow position:chrX:34990228-34990618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:380-761
               
               
               Cow position:chrX:40278977-40279360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 162

               
               
               Conread position:381-761
               
               
               Cow position:chrX:13524430-13524042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:381-761
               
               
               Cow position:chrX:30817104-30816711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 22

               
               
               Conread position:383-762
               
               
               Cow position:chrX:1343098-1342710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:384-621
               
               
               Cow position:chrX:18987619-18987853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:384-710
               
               
               Cow position:chrX:2185416-2185746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 135

               
               
               Conread position:386-739
               
               
               Cow position:chrX:37544154-37544521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):5, 155

               
               
               Conread position:386-761
               
               
               Cow position:chrX:21500800-21501176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 106

               
               
               Conread position:387-681
               
               
               Cow position:chrX:40707644-40707946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:387-759
               
               
               Cow position:chrX:27408287-27407905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:390-678
               
               
               Cow position:chrX:24923030-24923325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):18, 150

               
               
               Conread position:391-761
               
               
               Cow position:chrX:23522316-23521947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:391-761
               
               
               Cow position:chrX:40788309-40788705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:393-622
               
               
               Cow position:chrX:27445854-27446091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 159

               
               
               Conread position:393-761
               
               
               Cow position:chrX:28819930-28820296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:393-761
               
               
               Cow position:chrX:42010226-42010592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:406-768
               
               
               Cow position:chrX:4177013-4177386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):82, 141

               
               
               Conread position:406-768
               
               
               Cow position:chrX:18451888-18451512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 144

               
               
               Conread position:407-759
               
               
               Cow position:chrX:40545430-40545066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 143

               
               
               Conread position:407-768
               
               
               Cow position:chrX:16854194-16853822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):81, 143

               
               
               Conread position:408-651
               
               
               Cow position:chrX:16517939-16517684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 144

               
               
               Conread position:409-761
               
               
               Cow position:chrX:2763766-2764125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:410-615
               
               
               Cow position:chrX:35408831-35409044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:410-630
               
               
               Cow position:chrX:11509031-11509262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:410-704
               
               
               Cow position:chrX:34078242-34078551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:410-715
               
               
               Cow position:chrX:40827544-40827235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):84, 135

               
               
               Conread position:410-739
               
               
               Cow position:chrX:41114403-41114733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:410-759
               
               
               Cow position:chrX:6492930-6493288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:410-761
               
               
               Cow position:chrX:12033724-12033374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:410-761
               
               
               Cow position:chrX:37781873-37781521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 135

               
               
               Conread position:410-761
               
               
               Cow position:chrX:38007790-38007420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 143

               
               
               Conread position:410-761
               
               
               Cow position:chrX:41106807-41106459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:410-768
               
               
               Cow position:chrX:36250664-36250297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:411-666
               
               
               Cow position:chrX:23697205-23696932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:411-761
               
               
               Cow position:chrX:13786182-13785825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):61, 24

               
               
               Conread position:412-760
               
               
               Cow position:chrX:19128019-19127692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):211, 76

               
               
               Conread position:413-716
               
               
               Cow position:chrX:67147-67459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 140

               
               
               Conread position:417-592
               
               
               Cow position:chrX:36376789-36376958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 36

               
               
               Conread position:417-676
               
               
               Cow position:chrX:2146302-2146564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):87, 53

               
               
               Conread position:417-767
               
               
               Cow position:chrX:388712-389072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:419-761
               
               
               Cow position:chrX:15345083-15345424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:422-715
               
               
               Cow position:chrX:38999112-38999415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:435-730
               
               
               Cow position:chrX:2365884-2366189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:436-625
               
               
               Cow position:chrX:10329045-10329230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:436-645
               
               
               Cow position:chrX:7748123-7747906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:436-651
               
               
               Cow position:chrX:40320863-40321087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:443-605
               
               
               Cow position:chrX:7571103-7571269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:444-761
               
               
               Cow position:chrX:7695013-7695338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:444-761
               
               
               Cow position:chrX:28559605-28559276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:444-768
               
               
               Cow position:chrX:10931902-10932240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 101

               
               
               Conread position:444-768
               
               
               Cow position:chrX:24321037-24320705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:446-761
               
               
               Cow position:chrX:6836022-6835704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:456-768
               
               
               Cow position:chrX:45464699-45465011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:457-710
               
               
               Cow position:chrX:43566703-43566960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:457-731
               
               
               Cow position:chrX:23179550-23179286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:460-739
               
               
               Cow position:chrX:6194073-6193792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:460-740
               
               
               Cow position:chrX:36794263-36794531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:461-766
               
               
               Cow position:chrX:28133371-28133674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:462-644
               
               
               Cow position:chrX:11798731-11798914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 44

               
               
               Conread position:465-704
               
               
               Cow position:chrX:27646670-27646911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:466-740
               
               
               Cow position:chrX:32194834-32194557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:467-735
               
               
               Cow position:chrX:35283543-35283808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:468-655
               
               
               Cow position:chrX:22140432-22140236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:468-716
               
               
               Cow position:chrX:19228810-19228557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:470-761
               
               
               Cow position:chrX:23237572-23237878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 256

               
               
               Conread position:472-667
               
               
               Cow position:chrX:22116141-22115941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:474-740
               
               
               Cow position:chrX:27498044-27498304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:475-741
               
               
               Cow position:chrX:35680610-35680883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:476-761
               
               
               Cow position:chrX:14908278-14908569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:481-761
               
               
               Cow position:chrX:30430086-30429791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:482-620
               
               
               Cow position:chrX:33669008-33669147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:482-761
               
               
               Cow position:chrX:40187261-40187536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):146, 31

               
               
               Conread position:482-761
               
               
               Cow position:chrX:41796804-41797097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:483-620
               
               
               Cow position:chrX:37949036-37949170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:486-768
               
               
               Cow position:chrX:15439355-15439070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:487-671
               
               
               Cow position:chrX:19636170-19636361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 59

               
               
               Conread position:488-732
               
               
               Cow position:chrX:15574601-15574357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:489-761
               
               
               Cow position:chrX:2701550-2701279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:489-761
               
               
               Cow position:chrX:20733928-20734203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:491-707
               
               
               Cow position:chrX:3154995-3154782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:491-761
               
               
               Cow position:chrX:12291643-12291917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:491-761
               
               
               Cow position:chrX:37955186-37955456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:491-768
               
               
               Cow position:chrX:26617637-26617354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:492-768
               
               
               Cow position:chrX:25436645-25436366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:493-626
               
               
               Cow position:chrX:17283021-17282887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:493-626
               
               
               Cow position:chrX:37065985-37066116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:493-651
               
               
               Cow position:chrX:12097581-12097743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:493-666
               
               
               Cow position:chrX:39698289-39698466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:493-670
               
               
               Cow position:chrX:46093532-46093358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:493-691
               
               
               Cow position:chrX:22963526-22963323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:493-704
               
               
               Cow position:chrX:4420500-4420722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:493-738
               
               
               Cow position:chrX:10146381-10146132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:493-739
               
               
               Cow position:chrX:16355074-16354820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:493-740
               
               
               Cow position:chrX:4329785-4329548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:493-740
               
               
               Cow position:chrX:22409440-22409183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:493-761
               
               
               Cow position:chrX:10256855-10256584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:493-761
               
               
               Cow position:chrX:13889116-13889394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:493-761
               
               
               Cow position:chrX:20653857-20654126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:493-761
               
               
               Cow position:chrX:25329309-25329578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:493-761
               
               
               Cow position:chrX:31488802-31489069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:493-761
               
               
               Cow position:chrX:31570337-31570605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:493-768
               
               
               Cow position:chrX:1331228-1331503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:493-768
               
               
               Cow position:chrX:6202793-6203074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:493-768
               
               
               Cow position:chrX:9299564-9299280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:493-768
               
               
               Cow position:chrX:10915320-10915605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:493-768
               
               
               Cow position:chrX:22812348-22812629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:494-621
               
               
               Cow position:chrX:31605061-31604933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-651
               
               
               Cow position:chrX:26622352-26622193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:494-670
               
               
               Cow position:chrX:23908991-23908816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:494-675
               
               
               Cow position:chrX:41886115-41886300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:494-680
               
               
               Cow position:chrX:20976760-20976570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:494-681
               
               
               Cow position:chrX:2878455-2878266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:494-706
               
               
               Cow position:chrX:5375651-5375861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-711
               
               
               Cow position:chrX:19211246-19211026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:494-713
               
               
               Cow position:chrX:38839921-38840143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:494-729
               
               
               Cow position:chrX:21973231-21973465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:494-745
               
               
               Cow position:chrX:20580263-20580010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:494-748
               
               
               Cow position:chrX:18293230-18293484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:494-748
               
               
               Cow position:chrX:27001858-27002114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:494-759
               
               
               Cow position:chrX:28542596-28542338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-759
               
               
               Cow position:chrX:44052190-44052458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:494-761
               
               
               Cow position:chrX:12457985-12458255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:494-761
               
               
               Cow position:chrX:13057841-13058117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-761
               
               
               Cow position:chrX:15173237-15172969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:494-761
               
               
               Cow position:chrX:35388621-35388349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-761
               
               
               Cow position:chrX:45421713-45421442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:494-762
               
               
               Cow position:chrX:45042840-45043117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-766
               
               
               Cow position:chrX:516799-517073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:494-768
               
               
               Cow position:chrX:362166-361886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:5305888-5306168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:494-768
               
               
               Cow position:chrX:7119357-7119077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:10465072-10465352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:494-768
               
               
               Cow position:chrX:10923284-10923004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:11358778-11358498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:12290025-12290304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:494-768
               
               
               Cow position:chrX:12996567-12996292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:494-768
               
               
               Cow position:chrX:15346682-15346402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:16285498-16285778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:26506654-26506374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:28706389-28706669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:494-768
               
               
               Cow position:chrX:32039551-32039275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:494-768
               
               
               Cow position:chrX:32330918-32331198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:494-768
               
               
               Cow position:chrX:38014381-38014661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:495-692
               
               
               Cow position:chrX:6654992-6654791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:495-758
               
               
               Cow position:chrX:24735232-24735499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:495-761
               
               
               Cow position:chrX:25360853-25361119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:495-761
               
               
               Cow position:chrX:34866544-34866275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:495-768
               
               
               Cow position:chrX:38052144-38051865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:496-748
               
               
               Cow position:chrX:6278142-6277876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:496-761
               
               
               Cow position:chrX:11385677-11385412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:496-766
               
               
               Cow position:chrX:2207728-2207460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:496-768
               
               
               Cow position:chrX:9953406-9953682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:498-740
               
               
               Cow position:chrX:44206254-44206500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:498-768
               
               
               Cow position:chrX:4768010-4768283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:498-768
               
               
               Cow position:chrX:17291226-17291497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:498-768
               
               
               Cow position:chrX:17631538-17631266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:498-768
               
               
               Cow position:chrX:30821875-30822151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:499-740
               
               
               Cow position:chrX:19541043-19540799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:500-749
               
               
               Cow position:chrX:33884447-33884694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:500-768
               
               
               Cow position:chrX:29049277-29049542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:501-768
               
               
               Cow position:chrX:1576969-1576696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:502-686
               
               
               Cow position:chrX:6645854-6646045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:502-736
               
               
               Cow position:chrX:19030725-19030964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:502-761
               
               
               Cow position:chrX:2656405-2656655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:502-761
               
               
               Cow position:chrX:21196318-21196580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:503-739
               
               
               Cow position:chrX:20021841-20022077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:503-740
               
               
               Cow position:chrX:40475530-40475292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:503-761
               
               
               Cow position:chrX:1810861-1810602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:503-768
               
               
               Cow position:chrX:42120600-42120870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:504-761
               
               
               Cow position:chrX:10852313-10852059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:504-761
               
               
               Cow position:chrX:11674355-11674613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:504-761
               
               
               Cow position:chrX:17122732-17122480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:505-739
               
               
               Cow position:chrX:23987843-23988077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:505-761
               
               
               Cow position:chrX:1960515-1960775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:505-761
               
               
               Cow position:chrX:40541976-40542226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:505-763
               
               
               Cow position:chrX:13138916-13138655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:505-768
               
               
               Cow position:chrX:487836-488103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:507-681
               
               
               Cow position:chrX:22308155-22307977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:507-710
               
               
               Cow position:chrX:20789666-20789463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:507-739
               
               
               Cow position:chrX:2524422-2524199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:507-739
               
               
               Cow position:chrX:3145304-3145539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:507-744
               
               
               Cow position:chrX:26230212-26229975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:507-749
               
               
               Cow position:chrX:6012793-6012560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:507-761
               
               
               Cow position:chrX:4630398-4630142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:507-761
               
               
               Cow position:chrX:11819668-11819922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:507-761
               
               
               Cow position:chrX:21625678-21625421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:507-761
               
               
               Cow position:chrX:26437040-26437290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:507-761
               
               
               Cow position:chrX:33538232-33538484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:3582485-3582759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:4633555-4633290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:7486165-7486431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:507-768
               
               
               Cow position:chrX:9854579-9854840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:12001846-12001580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:13971938-13971672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:16478216-16478482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:22521920-22521654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:507-768
               
               
               Cow position:chrX:24447113-24447379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:507-768
               
               
               Cow position:chrX:29064720-29064980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:508-761
               
               
               Cow position:chrX:29055224-29055471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:508-761
               
               
               Cow position:chrX:29954488-29954241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:509-739
               
               
               Cow position:chrX:41082553-41082782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:509-761
               
               
               Cow position:chrX:23193285-23193031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:509-761
               
               
               Cow position:chrX:26844811-26845063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:509-762
               
               
               Cow position:chrX:18468079-18468327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:509-762
               
               
               Cow position:chrX:32071378-32071121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:509-768
               
               
               Cow position:chrX:1976294-1976030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:510-704
               
               
               Cow position:chrX:28766384-28766189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:510-761
               
               
               Cow position:chrX:13405046-13404793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):119, 40

               
               
               Conread position:510-768
               
               
               Cow position:chrX:30965405-30965668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:511-761
               
               
               Cow position:chrX:14263467-14263220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:511-768
               
               
               Cow position:chrX:5408360-5408622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:512-697
               
               
               Cow position:chrX:23121714-23121891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:512-758
               
               
               Cow position:chrX:41434098-41433854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:516-761
               
               
               Cow position:chrX:25816942-25816697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:517-642
               
               
               Cow position:chrX:33707741-33707869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:517-703
               
               
               Cow position:chrX:26967224-26967405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:517-748
               
               
               Cow position:chrX:38072455-38072222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:517-761
               
               
               Cow position:chrX:33614710-33614955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:517-768
               
               
               Cow position:chrX:26764780-26764525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:517-768
               
               
               Cow position:chrX:27594868-27594613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:518-736
               
               
               Cow position:chrX:24289146-24288926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:518-740
               
               
               Cow position:chrX:28608699-28608477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:518-758
               
               
               Cow position:chrX:43450399-43450636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:518-761
               
               
               Cow position:chrX:4326177-4325933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:518-761
               
               
               Cow position:chrX:30980581-30980334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:518-768
               
               
               Cow position:chrX:10427849-10428107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:521-666
               
               
               Cow position:chrX:14924365-14924515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:522-740
               
               
               Cow position:chrX:18078594-18078374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:522-768
               
               
               Cow position:chrX:18024357-18024607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:523-739
               
               
               Cow position:chrX:24317386-24317602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:523-761
               
               
               Cow position:chrX:27117288-27117521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:523-761
               
               
               Cow position:chrX:33815468-33815704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:524-768
               
               
               Cow position:chrX:2463378-2463133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:526-740
               
               
               Cow position:chrX:22869584-22869369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:526-761
               
               
               Cow position:chrX:31778112-31777877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:526-761
               
               
               Cow position:chrX:34564622-34564858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:527-621
               
               
               Cow position:chrX:20792422-20792514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:529-739
               
               
               Cow position:chrX:936403-936608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:529-740
               
               
               Cow position:chrX:28646658-28646446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:529-761
               
               
               Cow position:chrX:42531157-42530937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:529-763
               
               
               Cow position:chrX:20888285-20888049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:529-768
               
               
               Cow position:chrX:9018979-9018736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:532-761
               
               
               Cow position:chrX:30544656-30544425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 221

               
               
               Conread position:535-761
               
               
               Cow position:chrX:5018276-5018046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:535-761
               
               
               Cow position:chrX:14030347-14030576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:535-761
               
               
               Cow position:chrX:34840433-34840213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:535-768
               
               
               Cow position:chrX:9086004-9085766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:535-768
               
               
               Cow position:chrX:41103121-41103355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):115, 106

               
               
               Conread position:536-714
               
               
               Cow position:chrX:6690665-6690488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:536-761
               
               
               Cow position:chrX:29288906-29289135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:536-762
               
               
               Cow position:chrX:30920058-30919833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 50

               
               
               Conread position:536-768
               
               
               Cow position:chrX:19775150-19774913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:537-768
               
               
               Cow position:chrX:4868890-4869125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 155

               
               
               Conread position:537-768
               
               
               Cow position:chrX:32010619-32010388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:540-739
               
               
               Cow position:chrX:7288166-7288368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 6

               
               
               Conread position:541-763
               
               
               Cow position:chrX:41122407-41122629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):87, 66

               
               
               Conread position:542-715
               
               
               Cow position:chrX:6658474-6658656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:542-761
               
               
               Cow position:chrX:8795815-8796031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:542-761
               
               
               Cow position:chrX:28104948-28105170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:542-761
               
               
               Cow position:chrX:30822853-30823074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:542-761
               
               
               Cow position:chrX:35287997-35288212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:543-740
               
               
               Cow position:chrX:13359732-13359929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:543-768
               
               
               Cow position:chrX:24975280-24975511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:544-714
               
               
               Cow position:chrX:39511670-39511843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:546-761
               
               
               Cow position:chrX:19437745-19437529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 159

               
               
               Conread position:547-738
               
               
               Cow position:chrX:41192030-41192224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:547-761
               
               
               Cow position:chrX:18711876-18712090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:549-768
               
               
               Cow position:chrX:17497439-17497663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):79, 166

               
               
               Conread position:550-740
               
               
               Cow position:chrX:7512836-7513029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:550-768
               
               
               Cow position:chrX:24366609-24366384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:551-710
               
               
               Cow position:chrX:22577498-22577336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:551-761
               
               
               Cow position:chrX:9635908-9635695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:551-761
               
               
               Cow position:chrX:33493075-33493290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:551-761
               
               
               Cow position:chrX:45975903-45976115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 156

               
               
               Conread position:552-768
               
               
               Cow position:chrX:35268242-35268461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):76, 115

               
               
               Conread position:552-768
               
               
               Cow position:chrX:40452874-40452653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:552-768
               
               
               Cow position:chrX:40591032-40591253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:553-761
               
               
               Cow position:chrX:39383734-39383524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 153

               
               
               Conread position:554-758
               
               
               Cow position:chrX:47211493-47211285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:557-761
               
               
               Cow position:chrX:21662455-21662653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 76

               
               
               Conread position:557-761
               
               
               Cow position:chrX:25340385-25340586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 149

               
               
               Conread position:557-767
               
               
               Cow position:chrX:19807088-19807299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:558-768
               
               
               Cow position:chrX:12724119-12724334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:559-761
               
               
               Cow position:chrX:40450281-40450077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:560-761
               
               
               Cow position:chrX:17743424-17743628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 46

               
               
               Conread position:565-728
               
               
               Cow position:chrX:3807759-3807928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:566-759
               
               
               Cow position:chrX:619459-619263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:566-761
               
               
               Cow position:chrX:15993755-15993952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:569-761
               
               
               Cow position:chrX:21785132-21785327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:569-768
               
               
               Cow position:chrX:16734888-16735091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:570-761
               
               
               Cow position:chrX:631253-631062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:570-761
               
               
               Cow position:chrX:15306368-15306173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:570-768
               
               
               Cow position:chrX:41488801-41488598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:571-761
               
               
               Cow position:chrX:32871421-32871228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:571-768
               
               
               Cow position:chrX:37061426-37061224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:572-768
               
               
               Cow position:chrX:23666549-23666750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:575-761
               
               
               Cow position:chrX:14990127-14989938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:576-761
               
               
               Cow position:chrX:39546611-39546422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:577-745
               
               
               Cow position:chrX:41594911-41594740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:577-761
               
               
               Cow position:chrX:27485774-27485961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:585-737
               
               
               Cow position:chrX:33631533-33631688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:586-761
               
               
               Cow position:chrX:26749499-26749320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:598-761
               
               
               Cow position:chrX:9537934-9538100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:602-761
               
               
               Cow position:chrX:10960055-10960216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:602-768
               
               
               Cow position:chrX:42499678-42499507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:606-761
               
               
               Cow position:chrX:7571303-7571461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:610-761
               
               
               Cow position:chrX:17200191-17200345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:612-761
               
               
               Cow position:chrX:15008912-15008761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:612-761
               
               
               Cow position:chrX:21565546-21565697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:612-761
               
               
               Cow position:chrX:24826742-24826890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 78
Show alignments to all cow chromosomes.