Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052C04.5.5 |
| Conread position: | 1012-1297 |
| Cow position: | chr12:48468569-48468856 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 1066-1289 |
| Cow position: | chr12:30031807-30031580 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 1081-1288 |
| Cow position: | chr12:40230021-40229810 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 1081-1289 |
| Cow position: | chr12:26192484-26192277 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 1081-1314 |
| Cow position: | chr12:4601753-4601992 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 1082-1288 |
| Cow position: | chr12:10366411-10366199 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 162 |
| Conread position: | 1082-1290 |
| Cow position: | chr12:39416640-39416846 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 1082-1292 |
| Cow position: | chr12:4782151-4781939 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 1083-1284 |
| Cow position: | chr12:8589713-8589920 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 1083-1288 |
| Cow position: | chr12:27078668-27078457 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 151 |
| Conread position: | 1085-1248 |
| Cow position: | chr12:12264342-12264507 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1085-1289 |
| Cow position: | chr12:9252676-9252879 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 1085-1294 |
| Cow position: | chr12:16340180-16339965 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1087-1288 |
| Cow position: | chr12:25531641-25531854 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 198 |
| Conread position: | 1090-1251 |
| Cow position: | chr12:17970114-17970277 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 1090-1284 |
| Cow position: | chr12:4342392-4342597 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 1090-1291 |
| Cow position: | chr12:24537948-24538148 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 1095-1291 |
| Cow position: | chr12:37566024-37566225 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 145 |
| Conread position: | 1096-1285 |
| Cow position: | chr12:13957392-13957581 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 1096-1285 |
| Cow position: | chr12:15831127-15830930 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1096-1290 |
| Cow position: | chr12:37516337-37516140 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 155, 180 |
| Conread position: | 1099-1288 |
| Cow position: | chr12:22213817-22213624 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 1099-1288 |
| Cow position: | chr12:39147313-39147120 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 1099-1290 |
| Cow position: | chr12:22133933-22133737 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 106 |
| Conread position: | 1099-1292 |
| Cow position: | chr12:42565414-42565613 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 1099-1302 |
| Cow position: | chr12:6446905-6447111 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 1102-1252 |
| Cow position: | chr12:37797567-37797718 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1102-1285 |
| Cow position: | chr12:6461858-6461675 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 124, 133 |
| Conread position: | 1102-1288 |
| Cow position: | chr12:37114513-37114323 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 1102-1288 |
| Cow position: | chr12:41202849-41202659 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 1102-1292 |
| Cow position: | chr12:34515933-34515738 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 1102-1303 |
| Cow position: | chr12:20640740-20640540 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 151, 47 |
| Conread position: | 1103-1277 |
| Cow position: | chr12:26319517-26319341 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 151, 43 |
| Conread position: | 1103-1288 |
| Cow position: | chr12:5146442-5146627 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 150, 92 |
| Conread position: | 1103-1526 |
| Cow position: | chr12:16740972-16741393 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 1104-1227 |
| Cow position: | chr12:7205996-7205873 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1105-1288 |
| Cow position: | chr12:31949395-31949580 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 136, 144 |
| Conread position: | 1106-1285 |
| Cow position: | chr12:37893484-37893668 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1106-1288 |
| Cow position: | chr12:18286609-18286425 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 90 |
| Conread position: | 1109-1288 |
| Cow position: | chr12:40248254-40248437 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 1111-1289 |
| Cow position: | chr12:25925784-25925613 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 1122-1297 |
| Cow position: | chr12:5549038-5548858 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 1126-1288 |
| Cow position: | chr12:6664634-6664469 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 125, 14 |
| Conread position: | 1131-1288 |
| Cow position: | chr12:34414595-34414756 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1135-1288 |
| Cow position: | chr12:32446522-32446366 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 150 |
| Conread position: | 1239-1533 |
| Cow position: | chr12:29234625-29234913 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 1262-1541 |
| Cow position: | chr12:11750022-11749743 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 1273-1528 |
| Cow position: | chr12:29747112-29746862 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 1274-1539 |
| Cow position: | chr12:19188980-19189233 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 1286-1519 |
| Cow position: | chr12:3828595-3828818 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 1288-1494 |
| Cow position: | chr12:6629003-6629214 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 1288-1516 |
| Cow position: | chr12:27376023-27375796 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 1291-1536 |
| Cow position: | chr12:12837500-12837251 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 1292-1544 |
| Cow position: | chr12:6118773-6118522 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 1297-1543 |
| Cow position: | chr12:8560337-8560095 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 1310-1538 |
| Cow position: | chr12:37987203-37987441 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 1315-1532 |
| Cow position: | chr12:30828051-30827833 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 1334-1536 |
| Cow position: | chr12:39416961-39417163 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 68 |
| Conread position: | 1342-1545 |
| Cow position: | chr12:15642014-15642212 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 1346-1507 |
| Cow position: | chr12:15734386-15734545 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 1346-1538 |
| Cow position: | chr12:17951601-17951405 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 1353-1525 |
| Cow position: | chr12:26880884-26880708 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 128 |
| Conread position: | 1353-1545 |
| Cow position: | chr12:48468948-48469141 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 1357-1546 |
| Cow position: | chr12:26143169-26143359 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 1358-1540 |
| Cow position: | chr12:6785370-6785190 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 1359-1520 |
| Cow position: | chr12:35830286-35830127 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 1359-1537 |
| Cow position: | chr12:14304938-14304767 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 1359-1541 |
| Cow position: | chr12:16339848-16339664 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 1371-1520 |
| Cow position: | chr12:17318511-17318660 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 107 |
| Conread position: | 1371-1520 |
| Cow position: | chr12:40229683-40229534 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 1381-1532 |
| Cow position: | chr12:37985211-37985362 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 38, 59 |
Show alignments to all cow chromosomes.