Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052C04.5.5 |
| Conread position: | 1041-1235 |
| Cow position: | chr20:7511016-7511206 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 1072-1288 |
| Cow position: | chr20:6396580-6396364 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 182, 27 |
| Conread position: | 1079-1284 |
| Cow position: | chr20:36345809-36345601 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 1081-1260 |
| Cow position: | chr20:13302947-13302760 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1081-1287 |
| Cow position: | chr20:20068012-20068218 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 1081-1288 |
| Cow position: | chr20:24697231-24697442 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 1081-1290 |
| Cow position: | chr20:27442125-27441911 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 1081-1292 |
| Cow position: | chr20:21270270-21270061 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 1081-1297 |
| Cow position: | chr20:23142940-23142724 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 1083-1285 |
| Cow position: | chr20:23838181-23837978 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 171, 71 |
| Conread position: | 1085-1288 |
| Cow position: | chr20:31900538-31900744 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 1089-1290 |
| Cow position: | chr20:8220091-8219889 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 148 |
| Conread position: | 1090-1286 |
| Cow position: | chr20:26343462-26343654 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 1090-1288 |
| Cow position: | chr20:2015728-2015521 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 1090-1288 |
| Cow position: | chr20:11719117-11718911 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 1091-1284 |
| Cow position: | chr20:23066696-23066502 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 189 |
| Conread position: | 1091-1288 |
| Cow position: | chr20:2178440-2178237 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1092-1288 |
| Cow position: | chr20:12575577-12575377 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1093-1288 |
| Cow position: | chr20:27332023-27331824 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 1095-1288 |
| Cow position: | chr20:3159974-3160171 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 1095-1322 |
| Cow position: | chr20:17479698-17479471 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 119 |
| Conread position: | 1096-1247 |
| Cow position: | chr20:9135402-9135254 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 1096-1288 |
| Cow position: | chr20:5782443-5782640 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 122, 138 |
| Conread position: | 1096-1288 |
| Cow position: | chr20:12196368-12196172 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 1096-1289 |
| Cow position: | chr20:24831364-24831174 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 1096-1296 |
| Cow position: | chr20:13063784-13063985 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 122, 111 |
| Conread position: | 1096-1297 |
| Cow position: | chr20:24493028-24492828 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 157, 92 |
| Conread position: | 1099-1290 |
| Cow position: | chr20:22953737-22953543 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 152, 50 |
| Conread position: | 1099-1290 |
| Cow position: | chr20:34095536-34095731 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 1102-1288 |
| Cow position: | chr20:4706462-4706275 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 143, 130 |
| Conread position: | 1103-1242 |
| Cow position: | chr20:1049953-1049814 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1103-1284 |
| Cow position: | chr20:27002432-27002613 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 1103-1288 |
| Cow position: | chr20:6849813-6849630 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 1103-1288 |
| Cow position: | chr20:30181785-30181970 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 150, 37 |
| Conread position: | 1103-1296 |
| Cow position: | chr20:26793779-26793587 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 156, 8 |
| Conread position: | 1103-1309 |
| Cow position: | chr20:24069503-24069709 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 152, 131 |
| Conread position: | 1105-1288 |
| Cow position: | chr20:8596547-8596735 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1106-1290 |
| Cow position: | chr20:5362907-5362722 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 1106-1295 |
| Cow position: | chr20:25268265-25268071 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 1111-1291 |
| Cow position: | chr20:1533461-1533284 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 111, 137 |
| Conread position: | 1117-1287 |
| Cow position: | chr20:6523438-6523600 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 1123-1309 |
| Cow position: | chr20:13947041-13946852 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 1124-1271 |
| Cow position: | chr20:13589243-13589395 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 1126-1288 |
| Cow position: | chr20:5787119-5787286 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1150-1289 |
| Cow position: | chr20:5197694-5197551 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 1271-1516 |
| Cow position: | chr20:3446534-3446779 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 1288-1520 |
| Cow position: | chr20:20384269-20384037 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 57 |
| Conread position: | 1288-1531 |
| Cow position: | chr20:24831122-24830873 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 215 |
| Conread position: | 1288-1539 |
| Cow position: | chr20:5787381-5787619 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 1290-1533 |
| Cow position: | chr20:12273708-12273469 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 1305-1520 |
| Cow position: | chr20:2946330-2946539 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 1344-1507 |
| Cow position: | chr20:8925997-8925839 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 1349-1537 |
| Cow position: | chr20:26939450-26939258 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1357-1531 |
| Cow position: | chr20:27393183-27393012 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1358-1499 |
| Cow position: | chr20:27002725-27002866 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 1360-1522 |
| Cow position: | chr20:1488008-1487843 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1362-1509 |
| Cow position: | chr20:26510532-26510385 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 1371-1530 |
| Cow position: | chr20:5006942-5006784 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 1373-1544 |
| Cow position: | chr20:17261392-17261223 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 1375-1541 |
| Cow position: | chr20:35047032-35046866 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 1375-1544 |
| Cow position: | chr20:12575224-12575056 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 1381-1548 |
| Cow position: | chr20:3092811-3092974 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 1383-1524 |
| Cow position: | chr20:40502727-40502870 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1386-1539 |
| Cow position: | chr20:42283200-42283355 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 1403-1520 |
| Cow position: | chr20:4244373-4244491 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1404-1537 |
| Cow position: | chr20:13872979-13873108 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 1424-1548 |
| Cow position: | chr20:10148398-10148274 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.