Cow genome map

Conread name: Ss1.1-Pig4-TMW8052C04.5.5

Conread position: 1004-1304
Cow position: chr24:33368596-33368898 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 101, 57

Conread position: 1041-1288
Cow position: chr24:37434336-37434092 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 93

Conread position: 1080-1288
Cow position: chr24:37454026-37453815 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 62

Conread position: 1080-1289
Cow position: chr24:40757385-40757592 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 28, 35

Conread position: 1081-1259
Cow position: chr24:15416488-15416309 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 75

Conread position: 1081-1288
Cow position: chr24:23492050-23492261 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 61

Conread position: 1081-1288
Cow position: chr24:33518392-33518179 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 115

Conread position: 1081-1289
Cow position: chr24:19073999-19074208 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 60

Conread position: 1081-1289
Cow position: chr24:29369664-29369446 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 21, 0

Conread position: 1081-1289
Cow position: chr24:38715784-38715579 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 114, 8

Conread position: 1081-1290
Cow position: chr24:16631425-16631631 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 178, 33

Conread position: 1082-1288
Cow position: chr24:22912595-22912804 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 28, 16

Conread position: 1084-1290
Cow position: chr24:31003134-31002926 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 134, 102

Conread position: 1085-1288
Cow position: chr24:23988151-23988357 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 19, 0

Conread position: 1085-1288
Cow position: chr24:37716090-37715894 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 166, 35

Conread position: 1085-1288
Cow position: chr24:37856740-37856532 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 37

Conread position: 1085-1322
Cow position: chr24:24799566-24799321 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 58

Conread position: 1086-1534
Cow position: chr24:27959175-27958702 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 14

Conread position: 1088-1288
Cow position: chr24:17029974-17029771 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 6, 17

Conread position: 1090-1285
Cow position: chr24:25087725-25087924 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 7, 57

Conread position: 1090-1288
Cow position: chr24:12902960-12902754 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 132

Conread position: 1090-1290
Cow position: chr24:35638727-35638529 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 7, 51

Conread position: 1090-1293
Cow position: chr24:17925214-17925002 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 1090-1519
Cow position: chr24:37712265-37712717 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 293
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 39

Conread position: 1090-1540
Cow position: chr24:16170238-16170684 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 303
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 15, 51

Conread position: 1091-1290
Cow position: chr24:12193853-12193649 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 92

Conread position: 1091-1290
Cow position: chr24:38367391-38367595 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 1093-1284
Cow position: chr24:24862116-24862309 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 155

Conread position: 1094-1519
Cow position: chr24:37337554-37337102 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 284
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 40, 66

Conread position: 1095-1288
Cow position: chr24:16143492-16143689 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 154, 0

Conread position: 1095-1288
Cow position: chr24:28037051-28037248 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 129, 105

Conread position: 1096-1243
Cow position: chr24:6342973-6343114 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 1096-1288
Cow position: chr24:16652288-16652479 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 156, 34

Conread position: 1096-1288
Cow position: chr24:26555447-26555640 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 157, 18

Conread position: 1096-1290
Cow position: chr24:39199641-39199846 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 108

Conread position: 1096-1297
Cow position: chr24:25894451-25894657 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 85

Conread position: 1097-1294
Cow position: chr24:37230010-37230209 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 135
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 121, 0

Conread position: 1099-1288
Cow position: chr24:23692342-23692526 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 1099-1518
Cow position: chr24:25776868-25776438 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 291
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 35, 61

Conread position: 1100-1293
Cow position: chr24:34219983-34219791 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 141, 62

Conread position: 1102-1285
Cow position: chr24:22187492-22187309 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 118, 142

Conread position: 1102-1290
Cow position: chr24:22196450-22196638 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 108, 136

Conread position: 1103-1284
Cow position: chr24:30965064-30964883 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1103-1285
Cow position: chr24:6501699-6501516 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 156, 19

Conread position: 1103-1289
Cow position: chr24:18712915-18713101 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 148, 74

Conread position: 1103-1290
Cow position: chr24:211602-211793 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 32

Conread position: 1103-1290
Cow position: chr24:29200243-29200061 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 149, 49

Conread position: 1104-1229
Cow position: chr24:29180523-29180648 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1106-1285
Cow position: chr24:5616073-5616249 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 40

Conread position: 1106-1288
Cow position: chr24:16564259-16564444 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 147, 67

Conread position: 1106-1288
Cow position: chr24:18846630-18846819 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 173

Conread position: 1109-1257
Cow position: chr24:38444487-38444635 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1113-1278
Cow position: chr24:19040207-19040039 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 142, 27

Conread position: 1122-1285
Cow position: chr24:24898244-24898411 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 96, 29

Conread position: 1131-1520
Cow position: chr24:38835769-38836186 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 292
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 88, 42

Conread position: 1132-1285
Cow position: chr24:2608834-2608679 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 129, 148

Conread position: 1135-1285
Cow position: chr24:5891807-5891654 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 116, 67

Conread position: 1141-1290
Cow position: chr24:38263948-38264100 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 13

Conread position: 1244-1536
Cow position: chr24:31503675-31503377 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 200
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 103

Conread position: 1266-1539
Cow position: chr24:5893885-5893614 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 8

Conread position: 1271-1495
Cow position: chr24:24626502-24626280 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 125, 78

Conread position: 1271-1497
Cow position: chr24:15276256-15276483 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 55

Conread position: 1271-1524
Cow position: chr24:36473678-36473417 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 65

Conread position: 1271-1524
Cow position: chr24:37856496-37856242 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 33, 75

Conread position: 1285-1522
Cow position: chr24:24123561-24123328 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 57

Conread position: 1287-1532
Cow position: chr24:8195944-8196185 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 59

Conread position: 1290-1516
Cow position: chr24:38264154-38264379 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 50

Conread position: 1291-1510
Cow position: chr24:35638476-35638253 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 23, 38

Conread position: 1291-1512
Cow position: chr24:33010260-33010042 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 72

Conread position: 1291-1518
Cow position: chr24:15272623-15272407 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 1291-1540
Cow position: chr24:15416221-15415971 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 81

Conread position: 1291-1543
Cow position: chr24:37514291-37514037 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 14, 53

Conread position: 1291-1546
Cow position: chr24:18713152-18713401 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 231, 34

Conread position: 1292-1520
Cow position: chr24:42017741-42017507 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 23, 46

Conread position: 1295-1533
Cow position: chr24:25213419-25213661 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 12, 53

Conread position: 1307-1522
Cow position: chr24:37434026-37433807 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 26

Conread position: 1307-1537
Cow position: chr24:38575177-38575412 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 65, 32

Conread position: 1342-1520
Cow position: chr24:34219713-34219530 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 108

Conread position: 1343-1535
Cow position: chr24:8327114-8327304 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 77, 27

Conread position: 1347-1537
Cow position: chr24:30853328-30853139 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 52

Conread position: 1349-1536
Cow position: chr24:3419470-3419284 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 7, 136

Conread position: 1352-1513
Cow position: chr24:19907918-19908079 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 73

Conread position: 1352-1538
Cow position: chr24:39902730-39902540 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 1354-1520
Cow position: chr24:29988497-29988336 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 32

Conread position: 1358-1542
Cow position: chr24:42115078-42115263 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 81

Conread position: 1359-1502
Cow position: chr24:39293004-39292862 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 60, 17

Conread position: 1363-1542
Cow position: chr24:16631763-16631941 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 9, 38

Conread position: 1373-1519
Cow position: chr24:26094993-26095139 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 25

Conread position: 1374-1539
Cow position: chr24:25608100-25608262 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 23

Conread position: 1375-1543
Cow position: chr24:31053255-31053427 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 155

Conread position: 1397-1535
Cow position: chr24:38819677-38819815 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 94

Conread position: 1399-1531
Cow position: chr24:33518024-33517892 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 20, 44

Conread position: 1403-1536
Cow position: chr24:14896668-14896804 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 16, 0

Show alignments to all cow chromosomes.