Cow genome map

Conread name: Ss1.1-Pig4-TMW8052C04.5.5

Conread position: 1076-1287
Cow position: chr28:9083863-9084077 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 28, 152

Conread position: 1081-1267
Cow position: chr28:23833551-23833741 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 67

Conread position: 1081-1279
Cow position: chr28:24318156-24317955 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 95

Conread position: 1081-1283
Cow position: chr28:22411984-22411782 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 89

Conread position: 1081-1284
Cow position: chr28:9917430-9917230 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 152

Conread position: 1081-1288
Cow position: chr28:7603541-7603329 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 102

Conread position: 1081-1302
Cow position: chr28:22471653-22471437 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 24, 63

Conread position: 1082-1287
Cow position: chr28:25032182-25032390 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 1082-1288
Cow position: chr28:2140162-2140366 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 23, 132

Conread position: 1082-1291
Cow position: chr28:22536002-22535790 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 22, 188

Conread position: 1083-1284
Cow position: chr28:23281588-23281383 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 22, 68

Conread position: 1084-1288
Cow position: chr28:20942079-20941885 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 151, 11

Conread position: 1084-1290
Cow position: chr28:1428141-1428349 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 175, 86

Conread position: 1084-1290
Cow position: chr28:21854195-21853984 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 21, 150

Conread position: 1085-1230
Cow position: chr28:24365462-24365316 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 35

Conread position: 1085-1288
Cow position: chr28:4195153-4195362 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 19, 56

Conread position: 1085-1292
Cow position: chr28:1570969-1571175 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 165, 60

Conread position: 1085-1292
Cow position: chr28:19570168-19569947 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 1090-1288
Cow position: chr28:25912959-25912759 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 14, 92

Conread position: 1090-1301
Cow position: chr28:15058566-15058356 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 174

Conread position: 1092-1288
Cow position: chr28:17248719-17248514 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 96

Conread position: 1093-1285
Cow position: chr28:13179032-13179225 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 160, 16

Conread position: 1093-1288
Cow position: chr28:22269993-22270193 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 114

Conread position: 1096-1280
Cow position: chr28:22668466-22668653 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 163, 55

Conread position: 1096-1283
Cow position: chr28:11533135-11533326 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 86, 46

Conread position: 1096-1284
Cow position: chr28:4156951-4157140 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 157, 62

Conread position: 1096-1288
Cow position: chr28:32587886-32588079 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 154, 174

Conread position: 1097-1252
Cow position: chr28:34663519-34663367 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 1097-1286
Cow position: chr28:24215532-24215724 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 119, 145

Conread position: 1097-1288
Cow position: chr28:26984006-26983808 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 140, 0

Conread position: 1098-1270
Cow position: chr28:25910613-25910788 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 38

Conread position: 1098-1286
Cow position: chr28:11025427-11025236 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 138, 0

Conread position: 1099-1282
Cow position: chr28:527153-527333 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 157, 52

Conread position: 1102-1290
Cow position: chr28:27811324-27811515 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 17, 40

Conread position: 1102-1301
Cow position: chr28:1521634-1521430 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 159, 0

Conread position: 1103-1274
Cow position: chr28:14898151-14898313 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 1103-1284
Cow position: chr28:6971688-6971504 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 138, 126

Conread position: 1103-1285
Cow position: chr28:4023652-4023838 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 148, 0

Conread position: 1103-1285
Cow position: chr28:23096904-23097086 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 150, 68

Conread position: 1103-1288
Cow position: chr28:4587747-4587935 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 117, 130

Conread position: 1103-1288
Cow position: chr28:22610242-22610424 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 154, 88

Conread position: 1103-1289
Cow position: chr28:26466334-26466523 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 15, 121

Conread position: 1103-1290
Cow position: chr28:4078789-4078598 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 149, 0

Conread position: 1103-1294
Cow position: chr28:20773969-20773778 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 104, 30

Conread position: 1103-1297
Cow position: chr28:11759886-11759689 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 133
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 167, 0

Conread position: 1103-1301
Cow position: chr28:34009666-34009873 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 1104-1285
Cow position: chr28:18964091-18963908 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 150, 31

Conread position: 1104-1288
Cow position: chr28:9126537-9126348 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 1104-1290
Cow position: chr28:5369269-5369457 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 129, 46

Conread position: 1106-1285
Cow position: chr28:12481951-12482135 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 112, 29

Conread position: 1106-1497
Cow position: chr28:22271300-22270900 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 261
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 131, 59

Conread position: 1106-1504
Cow position: chr28:19443971-19444397 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 271
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 127, 0

Conread position: 1107-1288
Cow position: chr28:4136625-4136440 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 51

Conread position: 1109-1285
Cow position: chr28:24337840-24337662 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 145, 11

Conread position: 1114-1263
Cow position: chr28:26703557-26703402 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 122, 0

Conread position: 1119-1290
Cow position: chr28:14925752-14925575 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 132, 110

Conread position: 1123-1288
Cow position: chr28:17379178-17379014 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 87, 116

Conread position: 1126-1285
Cow position: chr28:24226546-24226708 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 1126-1308
Cow position: chr28:22891680-22891492 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 9, 85

Conread position: 1161-1548
Cow position: chr28:22382611-22382997 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 84

Conread position: 1180-1544
Cow position: chr28:22668600-22668965 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 247
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 19

Conread position: 1271-1508
Cow position: chr28:23097126-23097364 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 30

Conread position: 1271-1522
Cow position: chr28:22843554-22843797 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 102, 57

Conread position: 1271-1533
Cow position: chr28:27885548-27885293 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 48, 89

Conread position: 1278-1520
Cow position: chr28:23126455-23126210 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 36, 66

Conread position: 1278-1533
Cow position: chr28:9858613-9858860 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 100, 26

Conread position: 1285-1519
Cow position: chr28:24337610-24337379 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 29, 48

Conread position: 1285-1526
Cow position: chr28:27646022-27645768 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 30

Conread position: 1288-1507
Cow position: chr28:23833796-23834011 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 26, 60

Conread position: 1288-1516
Cow position: chr28:1571224-1571449 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 26, 46

Conread position: 1288-1519
Cow position: chr28:9917172-9916934 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 119

Conread position: 1288-1534
Cow position: chr28:3562717-3562959 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 85, 25

Conread position: 1288-1543
Cow position: chr28:21618649-21618903 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 69

Conread position: 1291-1515
Cow position: chr28:16558980-16559200 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 72

Conread position: 1295-1543
Cow position: chr28:24307215-24306971 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 18, 76

Conread position: 1296-1546
Cow position: chr28:27028740-27028490 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 18, 47

Conread position: 1316-1520
Cow position: chr28:28903221-28903011 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 105, 36

Conread position: 1331-1535
Cow position: chr28:18844902-18845104 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 89, 34

Conread position: 1346-1493
Cow position: chr28:27627285-27627434 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 40

Conread position: 1357-1546
Cow position: chr28:1127334-1127525 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 1358-1516
Cow position: chr28:20206588-20206750 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 90

Conread position: 1358-1518
Cow position: chr28:22246221-22246379 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 117

Conread position: 1358-1520
Cow position: chr28:16884066-16883906 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 61, 15

Conread position: 1358-1528
Cow position: chr28:24350360-24350531 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 20

Conread position: 1358-1535
Cow position: chr28:20941759-20941584 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 87

Conread position: 1360-1499
Cow position: chr28:23095119-23095255 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 1363-1516
Cow position: chr28:24226821-24226976 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 32

Conread position: 1372-1535
Cow position: chr28:3544556-3544400 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 1375-1507
Cow position: chr28:23047592-23047459 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 1375-1531
Cow position: chr28:11348118-11347960 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 1381-1520
Cow position: chr28:17127553-17127693 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 23

Conread position: 1382-1543
Cow position: chr28:34010006-34010170 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 134

Conread position: 1384-1500
Cow position: chr28:25912610-25912494 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 15

Conread position: 1385-1528
Cow position: chr28:22411477-22411334 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 13

Show alignments to all cow chromosomes.