Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052C04.5.5 |
| Conread position: | 1079-1287 |
| Cow position: | chr29:18304621-18304412 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 1079-1288 |
| Cow position: | chr29:9511356-9511142 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 25, 193 |
| Conread position: | 1081-1285 |
| Cow position: | chr29:32953912-32954113 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 1081-1288 |
| Cow position: | chr29:19635835-19635624 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 1081-1290 |
| Cow position: | chr29:30516149-30515940 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 1082-1293 |
| Cow position: | chr29:24266117-24266336 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 127 |
| Conread position: | 1083-1244 |
| Cow position: | chr29:34957179-34957344 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 1084-1290 |
| Cow position: | chr29:13095348-13095556 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 1085-1208 |
| Cow position: | chr29:34427555-34427430 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1085-1288 |
| Cow position: | chr29:20642340-20642550 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 139 |
| Conread position: | 1087-1288 |
| Cow position: | chr29:36296518-36296319 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 1088-1288 |
| Cow position: | chr29:5178294-5178087 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 1088-1288 |
| Cow position: | chr29:8067068-8067267 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 1090-1288 |
| Cow position: | chr29:27505532-27505734 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 1090-1290 |
| Cow position: | chr29:33123408-33123613 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1093-1288 |
| Cow position: | chr29:5636595-5636790 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 159, 96 |
| Conread position: | 1096-1274 |
| Cow position: | chr29:34580861-34580678 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 1096-1286 |
| Cow position: | chr29:16939644-16939838 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 1097-1285 |
| Cow position: | chr29:36402014-36402206 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 1098-1288 |
| Cow position: | chr29:38858869-38859064 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 1099-1291 |
| Cow position: | chr29:44598183-44597987 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1102-1252 |
| Cow position: | chr29:16339616-16339765 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1102-1257 |
| Cow position: | chr29:8296179-8296332 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1103-1248 |
| Cow position: | chr29:6399250-6399394 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 1103-1250 |
| Cow position: | chr29:13093777-13093922 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1103-1288 |
| Cow position: | chr29:40137474-40137288 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 144, 102 |
| Conread position: | 1103-1290 |
| Cow position: | chr29:6407224-6407040 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 150, 41 |
| Conread position: | 1103-1292 |
| Cow position: | chr29:34390039-34389845 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 117, 48 |
| Conread position: | 1103-1297 |
| Cow position: | chr29:19564875-19564673 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1103-1306 |
| Cow position: | chr29:9316266-9316059 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 148, 32 |
| Conread position: | 1104-1288 |
| Cow position: | chr29:36193023-36192835 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 114, 133 |
| Conread position: | 1109-1257 |
| Cow position: | chr29:29001050-29000906 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1109-1292 |
| Cow position: | chr29:23541612-23541424 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1109-1299 |
| Cow position: | chr29:45005966-45005772 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 139 |
| Conread position: | 1113-1292 |
| Cow position: | chr29:33128455-33128636 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 27 |
| Conread position: | 1117-1288 |
| Cow position: | chr29:6199425-6199251 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 106, 90 |
| Conread position: | 1119-1288 |
| Cow position: | chr29:43551689-43551516 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 1120-1290 |
| Cow position: | chr29:30611826-30611648 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1141-1294 |
| Cow position: | chr29:39443931-39443778 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 54 |
| Conread position: | 1247-1510 |
| Cow position: | chr29:34332334-34332075 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 125, 30 |
| Conread position: | 1263-1543 |
| Cow position: | chr29:5178057-5177774 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 1271-1535 |
| Cow position: | chr29:40137251-40136994 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 1271-1540 |
| Cow position: | chr29:40703818-40703552 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 1277-1547 |
| Cow position: | chr29:12693489-12693765 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 1287-1526 |
| Cow position: | chr29:21923511-21923274 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 1288-1518 |
| Cow position: | chr29:41809324-41809554 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 1288-1519 |
| Cow position: | chr29:31345645-31345414 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 1288-1519 |
| Cow position: | chr29:42367161-42366935 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 1288-1533 |
| Cow position: | chr29:38931719-38931968 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 1288-1536 |
| Cow position: | chr29:19564630-19564383 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 1294-1516 |
| Cow position: | chr29:19664627-19664844 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 1315-1538 |
| Cow position: | chr29:39372826-39373046 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 1337-1543 |
| Cow position: | chr29:42764633-42764841 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1346-1540 |
| Cow position: | chr29:31636894-31637086 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 131 |
| Conread position: | 1353-1517 |
| Cow position: | chr29:22610920-22611087 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 1353-1520 |
| Cow position: | chr29:36324208-36324377 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 1357-1520 |
| Cow position: | chr29:26134384-26134221 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 90 |
| Conread position: | 1357-1548 |
| Cow position: | chr29:36727829-36728022 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1358-1538 |
| Cow position: | chr29:40540686-40540864 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 1359-1522 |
| Cow position: | chr29:22524263-22524097 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 1364-1545 |
| Cow position: | chr29:6803220-6803035 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 1370-1547 |
| Cow position: | chr29:23120747-23120564 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1374-1541 |
| Cow position: | chr29:36937079-36937241 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 1376-1534 |
| Cow position: | chr29:34337689-34337528 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1379-1520 |
| Cow position: | chr29:40800716-40800858 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 1380-1533 |
| Cow position: | chr29:42139086-42139239 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 1381-1520 |
| Cow position: | chr29:45653491-45653351 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1382-1520 |
| Cow position: | chr29:36707675-36707535 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1384-1519 |
| Cow position: | chr29:6199124-6198988 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 1391-1534 |
| Cow position: | chr29:9506767-9506624 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 85 |
Show alignments to all cow chromosomes.