Cow genome map

Conread name: Ss1.1-Pig4-TMW8052J10.3

Conread position: 13-369
Cow position: chr14:25794954-25794598 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 72, 56

Conread position: 13-415
Cow position: chr14:25835939-25836341 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 248
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 198, 188

Conread position: 17-444
Cow position: chr14:3101024-3100598 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 270
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 137

Conread position: 18-452
Cow position: chr14:3080781-3080347 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 264
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 21-332
Cow position: chr14:3101268-3100960 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 194
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 72

Conread position: 22-393
Cow position: chr14:25794778-25794406 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 228
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 9, 150

Conread position: 23-409
Cow position: chr14:3100768-3100382 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 249
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 7, 119

Conread position: 32-430
Cow position: chr14:680218-680616 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 236
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 141, 125

Conread position: 34-292
Cow position: chr14:25836968-25837226 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 34-369
Cow position: chr14:25859769-25860104 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 211
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 72, 45

Conread position: 34-385
Cow position: chr14:25895027-25895378 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 232
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 138, 142

Conread position: 34-416
Cow position: chr14:3080597-3080215 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 233
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 112, 108

Conread position: 34-420
Cow position: chr14:25895447-25895834 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 228
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 383, 0

Conread position: 34-425
Cow position: chr14:25836296-25836687 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 244
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 197, 192

Conread position: 34-430
Cow position: chr14:3127857-3127461 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 254
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 198, 191

Conread position: 34-439
Cow position: chr14:25859265-25859670 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 247
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 34-451
Cow position: chr14:25783761-25784178 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 259
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 197, 191

Conread position: 34-452
Cow position: chr14:447754-448172 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 258
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 112, 107

Conread position: 34-452
Cow position: chr14:25836380-25836798 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 114

Conread position: 34-452
Cow position: chr14:25836716-25837134 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 256
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 108, 112

Conread position: 34-452
Cow position: chr14:25859181-25859599 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 256
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 35

Conread position: 34-452
Cow position: chr14:25859937-25860355 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 275
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 69, 55

Conread position: 34-452
Cow position: chr14:25876736-25877154 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 262
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 197, 191

Conread position: 34-452
Cow position: chr14:25876988-25877406 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 59

Conread position: 34-460
Cow position: chr14:25836548-25836975 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 265
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 360, 365

Conread position: 34-516
Cow position: chr14:25860021-25860501 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 292
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 419, 0

Conread position: 34-516
Cow position: chr14:25877072-25877552 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 291
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 350, 370

Conread position: 36-376
Cow position: chr14:25836886-25837226 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 211
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 195, 189

Conread position: 36-380
Cow position: chr14:3156149-3156493 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 210
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 36-385
Cow position: chr14:25876906-25877255 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 226
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 36-392
Cow position: chr14:25860275-25860631 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 195, 189

Conread position: 36-393
Cow position: chr14:25794679-25794321 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 221
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 140, 120

Conread position: 36-393
Cow position: chr14:25859519-25859876 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 222
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 195, 189

Conread position: 36-394
Cow position: chr14:25784183-25784541 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 225
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 215, 234

Conread position: 36-400
Cow position: chr14:25896037-25896401 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 230
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 57, 52

Conread position: 36-414
Cow position: chr14:680894-681272 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 230
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 274, 265

Conread position: 36-415
Cow position: chr14:25859603-25859982 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 244
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 195, 189

Conread position: 36-424
Cow position: chr14:447672-448060 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 247
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 230, 212

Conread position: 36-424
Cow position: chr14:3080175-3079787 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 245
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 236, 228

Conread position: 36-424
Cow position: chr14:25836466-25836854 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 248
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 127, 120

Conread position: 36-424
Cow position: chr14:25876654-25877042 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 255
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 196, 189

Conread position: 36-426
Cow position: chr14:3080091-3079701 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 239
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 235, 228

Conread position: 36-439
Cow position: chr14:25795183-25794780 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 251
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 196, 189

Conread position: 36-443
Cow position: chr14:3155408-3155815 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 260
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 110, 105

Conread position: 36-444
Cow position: chr14:25784267-25784675 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 250
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 195, 189

Conread position: 36-444
Cow position: chr14:25795015-25794607 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 246
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 196, 189

Conread position: 36-451
Cow position: chr14:3155981-3156396 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 254
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 235, 213

Conread position: 36-451
Cow position: chr14:25783511-25783926 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 36-451
Cow position: chr14:25783595-25784010 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 248
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 215, 226

Conread position: 36-451
Cow position: chr14:25784015-25784430 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 263
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 219, 226

Conread position: 36-451
Cow position: chr14:25784099-25784514 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 257
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 195, 189

Conread position: 36-451
Cow position: chr14:25836802-25837217 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 255
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 195, 189

Conread position: 36-451
Cow position: chr14:25860359-25860774 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 265
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 36-451
Cow position: chr14:25877410-25877825 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 36-451
Cow position: chr14:25910750-25911161 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 265
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 195, 40

Conread position: 36-452
Cow position: chr14:447588-448004 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 246
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 135, 140

Conread position: 36-452
Cow position: chr14:3080259-3079843 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 250
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 175, 155

Conread position: 36-452
Cow position: chr14:3080343-3079927 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 246
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 105

Conread position: 36-452
Cow position: chr14:3080427-3080011 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 254
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 235, 228

Conread position: 36-452
Cow position: chr14:3080679-3080263 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 244
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 36-452
Cow position: chr14:3080847-3080431 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 261
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 85, 72

Conread position: 36-452
Cow position: chr14:3127771-3127355 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 261
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 196, 189

Conread position: 36-452
Cow position: chr14:3156065-3156481 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 261
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 110, 105

Conread position: 36-452
Cow position: chr14:25836214-25836630 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 267
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 358, 363

Conread position: 36-452
Cow position: chr14:25860191-25860607 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 266
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 288, 306

Conread position: 36-452
Cow position: chr14:25877242-25877658 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 260
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 288, 306

Conread position: 36-452
Cow position: chr14:25877326-25877742 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 256
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 195, 189

Conread position: 36-452
Cow position: chr14:25895197-25895613 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 250
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 66

Conread position: 36-452
Cow position: chr14:25895365-25895781 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 251
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 156, 163

Conread position: 36-452
Cow position: chr14:25895533-25895949 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 245
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 36-452
Cow position: chr14:25895953-25896369 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 264
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 195, 189

Conread position: 36-453
Cow position: chr14:3127687-3127270 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 266
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 219, 205

Conread position: 36-460
Cow position: chr14:25859351-25859776 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 263
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 299, 310

Conread position: 36-460
Cow position: chr14:25895701-25896126 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 264
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 196, 189

Conread position: 36-463
Cow position: chr14:3127939-3127511 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 271
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 110, 105

Conread position: 36-469
Cow position: chr14:25910830-25911264 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 264
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 67

Conread position: 38-451
Cow position: chr14:25836048-25836461 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 258
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 193, 187

Conread position: 39-403
Cow position: chr14:25859438-25859802 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 225
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 132, 113

Conread position: 39-444
Cow position: chr14:3155900-3156305 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 257
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 48, 42

Conread position: 39-451
Cow position: chr14:25783346-25783758 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 251
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 31

Conread position: 39-460
Cow position: chr14:25877161-25877583 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 267
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 192, 186

Conread position: 40-452
Cow position: chr14:25876490-25876902 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 259
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 191, 185

Conread position: 42-451
Cow position: chr14:3080925-3080516 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 243
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 229, 222

Conread position: 47-451
Cow position: chr14:25783438-25783842 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 250
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 204, 223

Conread position: 48-468
Cow position: chr14:3081003-3080582 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 248
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 137, 129

Conread position: 52-451
Cow position: chr14:25783947-25784346 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 242
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 179, 173

Conread position: 54-377
Cow position: chr14:680660-680983 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 208
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 140, 160

Conread position: 54-499
Cow position: chr14:680828-681274 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 267
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 138, 157

Conread position: 62-444
Cow position: chr14:25836660-25837042 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 231
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 63-441
Cow position: chr14:3128164-3127786 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 231
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 168, 164

Conread position: 63-454
Cow position: chr14:447531-447922 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 243
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 25

Conread position: 69-392
Cow position: chr14:25835911-25836234 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 198
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 163, 156

Conread position: 85-451
Cow position: chr14:25783896-25784262 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 219
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 170, 185

Conread position: 93-451
Cow position: chr14:25783316-25783674 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 217
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 177, 153

Conread position: 102-452
Cow position: chr14:25876468-25876818 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 218
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 129, 123

Conread position: 122-444
Cow position: chr14:3155410-3155732 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 201
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 149, 143

Conread position: 124-452
Cow position: chr14:3128187-3127859 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 199
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 90, 67

Show alignments to all cow chromosomes.