Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052J10.3 |
| Conread position: | 3-376 |
| Cow position: | chr22:12431016-12430646 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 4-470 |
| Cow position: | chr22:14430033-14430498 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 182, 12 |
| Conread position: | 32-386 |
| Cow position: | chr22:12476396-12476041 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 233 |
| Conread position: | 32-393 |
| Cow position: | chr22:12432502-12432141 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 200, 193 |
| Conread position: | 34-369 |
| Cow position: | chr22:46654345-46654680 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 52 |
| Conread position: | 34-377 |
| Cow position: | chr22:46654513-46654857 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 177, 168 |
| Conread position: | 34-386 |
| Cow position: | chr22:12458444-12458092 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 198, 191 |
| Conread position: | 34-408 |
| Cow position: | chr22:12458528-12458154 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 112, 107 |
| Conread position: | 34-412 |
| Cow position: | chr22:12431156-12430778 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 34-452 |
| Cow position: | chr22:12399176-12398758 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 198, 191 |
| Conread position: | 34-452 |
| Cow position: | chr22:12476225-12475807 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 129, 122 |
| Conread position: | 34-452 |
| Cow position: | chr22:12499034-12499452 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 134, 118 |
| Conread position: | 34-493 |
| Cow position: | chr22:12385504-12385044 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 96, 109 |
| Conread position: | 35-405 |
| Cow position: | chr22:12458191-12457821 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 36-300 |
| Cow position: | chr22:12475551-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-300 |
| Cow position: | chr22:12499708-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-330 |
| Cow position: | chr22:14429980-14430274 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 82, 43 |
| Conread position: | 36-332 |
| Cow position: | chr22:14430568-14430864 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 36-363 |
| Cow position: | chr22:12458106-12457779 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 36-376 |
| Cow position: | chr22:12399090-12398750 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 120 |
| Conread position: | 36-376 |
| Cow position: | chr22:12431322-12430982 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 36-381 |
| Cow position: | chr22:12475635-12475290 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-381 |
| Cow position: | chr22:12499624-12499969 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-382 |
| Cow position: | chr22:46654095-46654441 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-386 |
| Cow position: | chr22:11640940-11641290 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 36-387 |
| Cow position: | chr22:12399426-12399075 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 36-392 |
| Cow position: | chr22:12399342-12398986 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 132, 120 |
| Conread position: | 36-392 |
| Cow position: | chr22:12432330-12431974 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 126, 131 |
| Conread position: | 36-393 |
| Cow position: | chr22:12399594-12399237 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-393 |
| Cow position: | chr22:12431070-12430713 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 115, 122 |
| Conread position: | 36-396 |
| Cow position: | chr22:12499120-12499480 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 36-407 |
| Cow position: | chr22:12544915-12545288 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 36-412 |
| Cow position: | chr22:12458358-12457982 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-414 |
| Cow position: | chr22:12476139-12475761 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 36-417 |
| Cow position: | chr22:12399258-12398877 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 36-427 |
| Cow position: | chr22:12458274-12457881 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 195, 190 |
| Conread position: | 36-443 |
| Cow position: | chr22:12399678-12399271 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 235, 229 |
| Conread position: | 36-444 |
| Cow position: | chr22:12399510-12399102 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 127, 137 |
| Conread position: | 36-451 |
| Cow position: | chr22:12385332-12384917 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 36-451 |
| Cow position: | chr22:12475803-12475388 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 163, 155 |
| Conread position: | 36-451 |
| Cow position: | chr22:12475887-12475472 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 110, 105 |
| Conread position: | 36-451 |
| Cow position: | chr22:12499372-12499787 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 36-452 |
| Cow position: | chr22:11640772-11641188 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 36-452 |
| Cow position: | chr22:11640856-11641272 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-452 |
| Cow position: | chr22:11641024-11641440 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 130, 121 |
| Conread position: | 36-452 |
| Cow position: | chr22:12418945-12418529 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 369, 384 |
| Conread position: | 36-452 |
| Cow position: | chr22:12431238-12430822 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-452 |
| Cow position: | chr22:12431658-12431242 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 236, 226 |
| Conread position: | 36-452 |
| Cow position: | chr22:12432414-12431998 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 131, 120 |
| Conread position: | 36-453 |
| Cow position: | chr22:11666529-11666946 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 36-453 |
| Cow position: | chr22:12418861-12418444 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 110, 105 |
| Conread position: | 36-460 |
| Cow position: | chr22:46654263-46654686 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-465 |
| Cow position: | chr22:46654431-46654857 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 170, 148 |
| Conread position: | 36-470 |
| Cow position: | chr22:12432246-12431812 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 36-474 |
| Cow position: | chr22:12476307-12475870 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 110, 105 |
| Conread position: | 36-487 |
| Cow position: | chr22:14468057-14468507 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 226, 205 |
| Conread position: | 38-452 |
| Cow position: | chr22:12432078-12431662 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 155 |
| Conread position: | 39-393 |
| Cow position: | chr22:12431907-12431553 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 169, 150 |
| Conread position: | 39-414 |
| Cow position: | chr22:14429815-14430190 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 124, 117 |
| Conread position: | 40-387 |
| Cow position: | chr22:12499292-12499639 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 154, 165 |
| Conread position: | 40-451 |
| Cow position: | chr22:12431822-12431411 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 192, 185 |
| Conread position: | 40-452 |
| Cow position: | chr22:12475967-12475555 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 212, 231 |
| Conread position: | 41-383 |
| Cow position: | chr22:14442215-14442558 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 330, 340 |
| Conread position: | 46-452 |
| Cow position: | chr22:12399914-12399514 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 203, 74 |
| Conread position: | 50-509 |
| Cow position: | chr22:12385402-12384945 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 182, 175 |
| Conread position: | 51-393 |
| Cow position: | chr22:11666460-11666802 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 112, 105 |
| Conread position: | 51-393 |
| Cow position: | chr22:11701114-11701456 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 105 |
| Conread position: | 52-451 |
| Cow position: | chr22:12419013-12418614 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-453 |
| Cow position: | chr22:11701283-11701684 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 133, 125 |
| Conread position: | 53-452 |
| Cow position: | chr22:12399829-12399430 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 172 |
| Conread position: | 53-452 |
| Cow position: | chr22:12498885-12499284 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 218, 211 |
| Conread position: | 60-452 |
| Cow position: | chr22:12458586-12458194 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-393 |
| Cow position: | chr22:12499481-12499813 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 137, 130 |
| Conread position: | 62-393 |
| Cow position: | chr22:14429754-14430085 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 63-440 |
| Cow position: | chr22:46654038-46654415 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 89-452 |
| Cow position: | chr22:12458641-12458278 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 103, 94 |
| Conread position: | 99-449 |
| Cow position: | chr22:12498847-12499198 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 340, 332 |
| Conread position: | 100-449 |
| Cow position: | chr22:12476411-12476061 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 126-451 |
| Cow position: | chr22:12432492-12432167 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 30 |
Show alignments to all cow chromosomes.