Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052J10.3 |
| Conread position: | 10-383 |
| Cow position: | chr23:24535821-24535448 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 222, 215 |
| Conread position: | 32-463 |
| Cow position: | chr23:24547336-24546904 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 34-296 |
| Cow position: | chr23:24546914-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 129, 117 |
| Conread position: | 34-375 |
| Cow position: | chr23:25660399-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-392 |
| Cow position: | chr23:25626278-25626633 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 243, 257 |
| Conread position: | 34-452 |
| Cow position: | chr23:24639548-24639966 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 34-452 |
| Cow position: | chr23:24639632-24640050 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 36-295 |
| Cow position: | chr23:25626781-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-300 |
| Cow position: | chr23:24654115-24654379 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 120 |
| Conread position: | 36-368 |
| Cow position: | chr23:25724045-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 196, 189 |
| Conread position: | 36-369 |
| Cow position: | chr23:25626697-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 149, 130 |
| Conread position: | 36-376 |
| Cow position: | chr23:24560472-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 235, 221 |
| Conread position: | 36-393 |
| Cow position: | chr23:24560388-24560030 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 133, 120 |
| Conread position: | 36-439 |
| Cow position: | chr23:25660317-25660720 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 196, 189 |
| Conread position: | 36-444 |
| Cow position: | chr23:24547248-24546840 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 132, 120 |
| Conread position: | 36-444 |
| Cow position: | chr23:25626613-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 195, 190 |
| Conread position: | 36-446 |
| Cow position: | chr23:24639718-24640127 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-451 |
| Cow position: | chr23:24547164-24546749 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-452 |
| Cow position: | chr23:24560556-24560140 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 191 |
| Conread position: | 36-452 |
| Cow position: | chr23:24560640-24560224 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 127, 120 |
| Conread position: | 36-452 |
| Cow position: | chr23:24560808-24560392 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-452 |
| Cow position: | chr23:25626448-25626861 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 36-452 |
| Cow position: | chr23:25660233-25660649 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 151, 120 |
| Conread position: | 36-465 |
| Cow position: | chr23:24639466-24639893 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 36-473 |
| Cow position: | chr23:24626306-24626741 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 36-502 |
| Cow position: | chr23:24547080-24546615 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 39-392 |
| Cow position: | chr23:24522567-24522214 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 192, 186 |
| Conread position: | 39-442 |
| Cow position: | chr23:25698655-25698252 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 39-452 |
| Cow position: | chr23:24522732-24522322 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 160, 125 |
| Conread position: | 40-444 |
| Cow position: | chr23:24522647-24522246 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 47-356 |
| Cow position: | chr23:24522475-24522166 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 50-370 |
| Cow position: | chr23:24654045-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 120, 102 |
| Conread position: | 50-452 |
| Cow position: | chr23:24560878-24560476 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 181, 175 |
| Conread position: | 51-393 |
| Cow position: | chr23:25660164-25660506 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 180, 174 |
| Conread position: | 51-444 |
| Cow position: | chr23:24536032-24535639 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 181, 174 |
| Conread position: | 51-463 |
| Cow position: | chr23:24639229-24639642 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 180, 174 |
| Conread position: | 54-452 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 291, 287 |
| Conread position: | 58-451 |
| Cow position: | chr23:25626554-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 173, 23 |
| Conread position: | 58-452 |
| Cow position: | chr23:24560702-24560308 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 105, 98 |
| Conread position: | 60-452 |
| Cow position: | chr23:24639406-24639798 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 106, 96 |
| Conread position: | 60-493 |
| Cow position: | chr23:24535855-24535423 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 91-452 |
| Cow position: | chr23:24626277-24626638 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 109-465 |
| Cow position: | chr23:24560903-24560549 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 123, 116 |
| Conread position: | 121-459 |
| Cow position: | chr23:24654033-24654371 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 219-445 |
| Cow position: | chr23:25660164-25660389 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 37 |
Show alignments to all cow chromosomes.