Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052J10.3 |
| Conread position: | 1-999 |
| Cow position: | chr25:366687-367638 (view UCSC Genome Browser custom track) |
| Alignm length: | 1010 |
| Alignm identity: | 740 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 523, 315 |
| Conread position: | 1-1007 |
| Cow position: | chr25:346410-347400 (view UCSC Genome Browser custom track) |
| Alignm length: | 1015 |
| Alignm identity: | 834 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 769, 562 |
| Conread position: | 12-439 |
| Cow position: | chr25:34714006-34714434 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 8, 130 |
| Conread position: | 19-332 |
| Cow position: | chr25:34769558-34769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 18, 209 |
| Conread position: | 19-439 |
| Cow position: | chr25:34433502-34433920 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 103 |
| Conread position: | 25-461 |
| Cow position: | chr25:33299388-33299824 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 5, 239 |
| Conread position: | 29-386 |
| Cow position: | chr25:33298889-33299246 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 239, 234 |
| Conread position: | 34-295 |
| Cow position: | chr25:327002-327263 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-373 |
| Cow position: | chr25:33305885-33305552 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 55 |
| Conread position: | 34-383 |
| Cow position: | chr25:33299230-33299580 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 34-393 |
| Cow position: | chr25:33299314-33299673 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 34-405 |
| Cow position: | chr25:33298726-33299097 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 112, 108 |
| Conread position: | 34-444 |
| Cow position: | chr25:33298642-33299052 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 128, 140 |
| Conread position: | 34-444 |
| Cow position: | chr25:33298978-33299388 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 34-444 |
| Cow position: | chr25:33299146-33299556 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 34-449 |
| Cow position: | chr25:34769625-34769209 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 153, 148 |
| Conread position: | 34-449 |
| Cow position: | chr25:34770045-34769629 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 129, 122 |
| Conread position: | 34-451 |
| Cow position: | chr25:34770129-34769712 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 198, 191 |
| Conread position: | 34-452 |
| Cow position: | chr25:23420378-23420796 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 136, 122 |
| Conread position: | 34-452 |
| Cow position: | chr25:36800878-36801296 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 112, 108 |
| Conread position: | 34-457 |
| Cow position: | chr25:34447437-34447852 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 107 |
| Conread position: | 34-463 |
| Cow position: | chr25:33298810-33299240 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 420, 0 |
| Conread position: | 34-463 |
| Cow position: | chr25:36800710-36801140 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 35-369 |
| Cow position: | chr25:34763410-34763741 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 35-385 |
| Cow position: | chr25:36800795-36801145 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-395 |
| Cow position: | chr25:33298475-33298835 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 109, 113 |
| Conread position: | 36-293 |
| Cow position: | chr25:33127967-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 116 |
| Conread position: | 36-293 |
| Cow position: | chr25:33145179-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-362 |
| Cow position: | chr25:33157056-33156731 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-367 |
| Cow position: | chr25:326494-326825 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-367 |
| Cow position: | chr25:23420548-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-377 |
| Cow position: | chr25:23420464-23420805 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-385 |
| Cow position: | chr25:25652437-25652786 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 105 |
| Conread position: | 36-405 |
| Cow position: | chr25:33299064-33299433 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 126, 137 |
| Conread position: | 36-424 |
| Cow position: | chr25:22235910-22236298 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 231, 212 |
| Conread position: | 36-424 |
| Cow position: | chr25:25652353-25652741 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 105 |
| Conread position: | 36-430 |
| Cow position: | chr25:34769791-34769397 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-444 |
| Cow position: | chr25:34762910-34763315 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 189, 206 |
| Conread position: | 36-449 |
| Cow position: | chr25:34447187-34447601 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 161, 175 |
| Conread position: | 36-451 |
| Cow position: | chr25:34769875-34769460 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 120 |
| Conread position: | 36-452 |
| Cow position: | chr25:3664180-3664596 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-452 |
| Cow position: | chr25:33127799-33128215 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-452 |
| Cow position: | chr25:33157224-33156808 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-452 |
| Cow position: | chr25:33157308-33156892 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 189 |
| Conread position: | 36-452 |
| Cow position: | chr25:33157392-33156976 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-452 |
| Cow position: | chr25:33157476-33157060 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 36-452 |
| Cow position: | chr25:34763327-34763740 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 177, 125 |
| Conread position: | 36-452 |
| Cow position: | chr25:34769959-34769543 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 405, 414 |
| Conread position: | 36-453 |
| Cow position: | chr25:34763243-34763659 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 36-493 |
| Cow position: | chr25:326746-327208 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 110 |
| Conread position: | 37-452 |
| Cow position: | chr25:33305321-33304908 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 126, 115 |
| Conread position: | 38-414 |
| Cow position: | chr25:22235828-22236204 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 356, 362 |
| Conread position: | 38-502 |
| Cow position: | chr25:414775-414319 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 39-368 |
| Cow position: | chr25:34732104-34731775 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 150, 167 |
| Conread position: | 39-425 |
| Cow position: | chr25:34446938-34447324 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 158, 171 |
| Conread position: | 39-430 |
| Cow position: | chr25:25652860-25653251 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 233, 209 |
| Conread position: | 39-443 |
| Cow position: | chr25:25652188-25652592 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 107 |
| Conread position: | 39-451 |
| Cow position: | chr25:34447022-34447434 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 192, 186 |
| Conread position: | 39-468 |
| Cow position: | chr25:36801543-36801970 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 229, 212 |
| Conread position: | 41-452 |
| Cow position: | chr25:33298565-33298976 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 129, 137 |
| Conread position: | 42-452 |
| Cow position: | chr25:33127721-33128131 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 189, 183 |
| Conread position: | 46-452 |
| Cow position: | chr25:34762836-34763239 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 224, 217 |
| Conread position: | 53-452 |
| Cow position: | chr25:33145027-33145427 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 60-369 |
| Cow position: | chr25:33145119-33145428 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 60-385 |
| Cow position: | chr25:34447379-34447704 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 60-446 |
| Cow position: | chr25:34769683-34769297 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 172, 165 |
| Conread position: | 60-452 |
| Cow position: | chr25:25652293-25652685 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 357, 369 |
| Conread position: | 60-452 |
| Cow position: | chr25:34446875-34447267 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 154, 142 |
| Conread position: | 60-460 |
| Cow position: | chr25:23420320-23420721 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 172, 167 |
| Conread position: | 63-373 |
| Cow position: | chr25:326947-327257 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 121, 111 |
| Conread position: | 63-487 |
| Cow position: | chr25:326353-326776 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 114, 132 |
| Conread position: | 66-452 |
| Cow position: | chr25:33127661-33128047 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 67-452 |
| Cow position: | chr25:33157529-33157144 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 204, 198 |
| Conread position: | 97-444 |
| Cow position: | chr25:34763136-34763480 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 134, 128 |
| Conread position: | 97-465 |
| Cow position: | chr25:326469-326837 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 24, 130 |
| Conread position: | 102-417 |
| Cow position: | chr25:414795-414486 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 243, 45 |
| Conread position: | 116-452 |
| Cow position: | chr25:34732615-34732279 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 155, 149 |
| Conread position: | 120-444 |
| Cow position: | chr25:34762826-34763147 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 286, 0 |
| Conread position: | 120-463 |
| Cow position: | chr25:33298476-33298820 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 186-449 |
| Cow position: | chr25:326986-327250 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 205-453 |
| Cow position: | chr25:34762826-34763075 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.