Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052J10.3 |
| Conread position: | 18-346 |
| Cow position: | chr28:33210291-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 213, 208 |
| Conread position: | 18-452 |
| Cow position: | chr28:9298631-9299060 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 19-384 |
| Cow position: | chr28:9298796-9299160 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 189 |
| Conread position: | 29-369 |
| Cow position: | chr28:7757994-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 202, 196 |
| Conread position: | 29-469 |
| Cow position: | chr28:9252926-9253366 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 231, 17 |
| Conread position: | 29-492 |
| Cow position: | chr28:9253177-9253640 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 119 |
| Conread position: | 29-495 |
| Cow position: | chr28:7757658-7758122 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 202, 196 |
| Conread position: | 33-452 |
| Cow position: | chr28:34695990-34696409 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 354, 367 |
| Conread position: | 34-316 |
| Cow position: | chr28:9290414-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 34-369 |
| Cow position: | chr28:34696243-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-386 |
| Cow position: | chr28:7757831-7758183 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 34-393 |
| Cow position: | chr28:7810586-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 134, 122 |
| Conread position: | 34-413 |
| Cow position: | chr28:7757579-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 34-413 |
| Cow position: | chr28:7810343-7810713 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 168, 176 |
| Conread position: | 34-444 |
| Cow position: | chr28:9253098-9253508 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 263 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 34-449 |
| Cow position: | chr28:7757495-7757911 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 111, 107 |
| Conread position: | 34-449 |
| Cow position: | chr28:11333890-11333474 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 34-452 |
| Cow position: | chr28:34696075-34696493 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 273, 264 |
| Conread position: | 34-460 |
| Cow position: | chr28:9253014-9253441 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 412, 0 |
| Conread position: | 35-452 |
| Cow position: | chr28:7757916-7758333 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 229, 235 |
| Conread position: | 35-487 |
| Cow position: | chr28:7757412-7757863 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 233, 220 |
| Conread position: | 36-370 |
| Cow position: | chr28:11333804-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 36-460 |
| Cow position: | chr28:34696161-34696584 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 36-462 |
| Cow position: | chr28:11334140-11333712 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 112, 106 |
| Conread position: | 39-394 |
| Cow position: | chr28:7758408-7758763 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 193, 186 |
| Conread position: | 39-430 |
| Cow position: | chr28:33210228-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 51 |
| Conread position: | 39-432 |
| Cow position: | chr28:11334053-11333661 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 192, 186 |
| Conread position: | 39-441 |
| Cow position: | chr28:34695912-34696314 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-443 |
| Cow position: | chr28:7758324-7758728 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 192, 186 |
| Conread position: | 40-392 |
| Cow position: | chr28:34673356-34673708 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-413 |
| Cow position: | chr28:34673440-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 125, 135 |
| Conread position: | 40-452 |
| Cow position: | chr28:34695829-34696241 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-382 |
| Cow position: | chr28:9290344-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 96, 31 |
| Conread position: | 51-310 |
| Cow position: | chr28:7810276-7810535 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 111, 120 |
| Conread position: | 52-451 |
| Cow position: | chr28:7757765-7758164 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 179, 173 |
| Conread position: | 54-492 |
| Cow position: | chr28:11334206-11333769 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 156, 148 |
| Conread position: | 60-393 |
| Cow position: | chr28:9290273-9290604 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 60-444 |
| Cow position: | chr28:7757353-7757737 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 84-452 |
| Cow position: | chr28:11333924-11333556 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 158, 141 |
| Conread position: | 101-463 |
| Cow position: | chr28:9290066-9290424 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 50 |
| Conread position: | 120-386 |
| Cow position: | chr28:33210225-33210491 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 151, 141 |
| Conread position: | 231-386 |
| Cow position: | chr28:7810288-7810443 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 40, 24 |
Show alignments to all cow chromosomes.