Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052L01.5 |
| Conread position: | 11-313 |
| Cow position: | chr1:96484700-96485011 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 48-309 |
| Cow position: | chr1:99798682-99798421 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 52-279 |
| Cow position: | chr1:75818238-75818465 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 53-309 |
| Cow position: | chr1:22572311-22572568 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 54-313 |
| Cow position: | chr1:99743056-99743319 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 56-322 |
| Cow position: | chr1:21035609-21035341 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 60-273 |
| Cow position: | chr1:95866377-95866584 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 60-313 |
| Cow position: | chr1:13748887-13748639 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 60-313 |
| Cow position: | chr1:26710563-26710818 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 60-313 |
| Cow position: | chr1:44609027-44608781 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 60-323 |
| Cow position: | chr1:32933551-32933815 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 62-313 |
| Cow position: | chr1:5543194-5543442 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 62-313 |
| Cow position: | chr1:91394131-91393882 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 132, 78 |
| Conread position: | 75-325 |
| Cow position: | chr1:54355445-54355193 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 79-313 |
| Cow position: | chr1:56978743-56978504 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 85-303 |
| Cow position: | chr1:614726-614505 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 70, 116 |
| Conread position: | 85-310 |
| Cow position: | chr1:90294716-90294493 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 37 |
| Conread position: | 85-319 |
| Cow position: | chr1:70800490-70800255 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 86-313 |
| Cow position: | chr1:95799601-95799382 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 106-309 |
| Cow position: | chr1:12187905-12188115 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 112-312 |
| Cow position: | chr1:71986437-71986235 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 112-321 |
| Cow position: | chr1:26153908-26153696 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 120-310 |
| Cow position: | chr1:42233148-42232959 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 125-309 |
| Cow position: | chr1:43778365-43778548 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 125-310 |
| Cow position: | chr1:87849857-87849674 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 125 |
| Conread position: | 125-319 |
| Cow position: | chr1:4489041-4489230 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 127-284 |
| Cow position: | chr1:4420473-4420631 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 127-305 |
| Cow position: | chr1:28639157-28638978 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 128-287 |
| Cow position: | chr1:7189704-7189544 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 118 |
| Conread position: | 129-313 |
| Cow position: | chr1:80070653-80070464 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 142-313 |
| Cow position: | chr1:83496004-83496178 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 144-313 |
| Cow position: | chr1:26717530-26717701 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 146-317 |
| Cow position: | chr1:6772071-6771895 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 150-313 |
| Cow position: | chr1:55291012-55291177 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.