Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052L23.3.5 |
| Conread position: | 823-1154 |
| Cow position: | chr11:19848485-19848145 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 269, 37 |
| Conread position: | 825-1050 |
| Cow position: | chr11:16230988-16231201 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 167, 26 |
| Conread position: | 825-1107 |
| Cow position: | chr11:22295977-22296257 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 133, 5 |
| Conread position: | 826-1109 |
| Cow position: | chr11:34643263-34642988 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 826-1118 |
| Cow position: | chr11:80319923-80319634 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 826-1157 |
| Cow position: | chr11:65117212-65117552 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 203, 24 |
| Conread position: | 827-945 |
| Cow position: | chr11:47872429-47872545 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 827-1055 |
| Cow position: | chr11:69294719-69294943 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 827-1091 |
| Cow position: | chr11:21848616-21848350 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 827-1094 |
| Cow position: | chr11:13267640-13267383 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 189, 34 |
| Conread position: | 827-1095 |
| Cow position: | chr11:65620823-65620567 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 827-1104 |
| Cow position: | chr11:11887910-11887643 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 827-1109 |
| Cow position: | chr11:11744644-11744910 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 827-1109 |
| Cow position: | chr11:15115338-15115610 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 187, 34 |
| Conread position: | 827-1109 |
| Cow position: | chr11:34115836-34115557 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 827-1116 |
| Cow position: | chr11:28221102-28220813 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 156, 33 |
| Conread position: | 827-1178 |
| Cow position: | chr11:79662216-79661856 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 828-1071 |
| Cow position: | chr11:11318389-11318152 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 167, 34 |
| Conread position: | 828-1108 |
| Cow position: | chr11:16743269-16742993 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 828-1109 |
| Cow position: | chr11:75457275-75457558 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 829-946 |
| Cow position: | chr11:52023540-52023424 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 829-1158 |
| Cow position: | chr11:72454083-72454403 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 118, 9 |
| Conread position: | 829-1166 |
| Cow position: | chr11:18357260-18357595 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 829-1167 |
| Cow position: | chr11:33987641-33987316 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 831-1109 |
| Cow position: | chr11:41280412-41280144 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 268, 30 |
| Conread position: | 831-1178 |
| Cow position: | chr11:24514700-24514347 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 125, 30 |
| Conread position: | 832-1093 |
| Cow position: | chr11:62443536-62443281 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 122, 19 |
| Conread position: | 833-1065 |
| Cow position: | chr11:8757599-8757374 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 833-1109 |
| Cow position: | chr11:66057950-66057675 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 835-1155 |
| Cow position: | chr11:55933421-55933757 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 160, 26 |
| Conread position: | 838-1109 |
| Cow position: | chr11:11743273-11743014 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 838-1109 |
| Cow position: | chr11:20558906-20558652 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 147, 14 |
| Conread position: | 838-1123 |
| Cow position: | chr11:59916635-59916915 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 171, 21 |
| Conread position: | 864-1016 |
| Cow position: | chr11:43847210-43847361 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 864-1107 |
| Cow position: | chr11:52237006-52237245 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 174, 124 |
| Conread position: | 864-1109 |
| Cow position: | chr11:56636662-56636901 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 864-1118 |
| Cow position: | chr11:65155771-65156022 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 128, 11 |
| Conread position: | 868-1109 |
| Cow position: | chr11:11514330-11514076 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 872-1109 |
| Cow position: | chr11:39278362-39278599 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 84 |
| Conread position: | 1701-1945 |
| Cow position: | chr11:22884658-22884415 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 1736-1934 |
| Cow position: | chr11:13684508-13684698 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1750-1951 |
| Cow position: | chr11:65762379-65762595 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1751-1949 |
| Cow position: | chr11:18915209-18915024 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1760-1949 |
| Cow position: | chr11:63998895-63999094 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1779-1948 |
| Cow position: | chr11:18852076-18851907 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 90, 125 |
| Conread position: | 1780-1949 |
| Cow position: | chr11:17083141-17083312 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 1780-1949 |
| Cow position: | chr11:17721629-17721804 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1780-1949 |
| Cow position: | chr11:25119764-25119934 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 100 |
| Conread position: | 1780-1949 |
| Cow position: | chr11:44032178-44032009 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 1780-1949 |
| Cow position: | chr11:49872715-49872887 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 151 |
| Conread position: | 1780-1950 |
| Cow position: | chr11:40608421-40608597 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 54 |
| Conread position: | 1781-1948 |
| Cow position: | chr11:77319583-77319413 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.