Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052L23.3.5 |
| Conread position: | 820-1065 |
| Cow position: | chr18:29516912-29516675 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 824-1095 |
| Cow position: | chr18:38463305-38463571 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 129, 38 |
| Conread position: | 824-1105 |
| Cow position: | chr18:6797533-6797817 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 37 |
| Conread position: | 824-1178 |
| Cow position: | chr18:20076294-20076646 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 236, 37 |
| Conread position: | 826-1062 |
| Cow position: | chr18:15223379-15223150 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 225, 35 |
| Conread position: | 826-1093 |
| Cow position: | chr18:26882908-26883168 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 826-1109 |
| Cow position: | chr18:37526595-37526874 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 175, 35 |
| Conread position: | 826-1119 |
| Cow position: | chr18:25964323-25964029 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 166, 35 |
| Conread position: | 827-1024 |
| Cow position: | chr18:40361180-40360986 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 34 |
| Conread position: | 827-1038 |
| Cow position: | chr18:41794227-41794020 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 129, 35 |
| Conread position: | 827-1072 |
| Cow position: | chr18:29086765-29086518 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 223, 34 |
| Conread position: | 827-1094 |
| Cow position: | chr18:26452983-26453248 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 827-1095 |
| Cow position: | chr18:29829346-29829609 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 827-1095 |
| Cow position: | chr18:44188279-44188536 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 827-1106 |
| Cow position: | chr18:20907973-20907698 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 827-1109 |
| Cow position: | chr18:22488770-22488486 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 827-1155 |
| Cow position: | chr18:36852813-36853155 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 828-1096 |
| Cow position: | chr18:51155028-51154772 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 223, 10 |
| Conread position: | 829-1109 |
| Cow position: | chr18:4746908-4746634 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 168, 32 |
| Conread position: | 830-1090 |
| Cow position: | chr18:18027914-18027658 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 830-1158 |
| Cow position: | chr18:32619410-32619741 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 163, 24 |
| Conread position: | 839-1153 |
| Cow position: | chr18:32662117-32661811 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 153, 22 |
| Conread position: | 841-1109 |
| Cow position: | chr18:28959363-28959624 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 124, 19 |
| Conread position: | 844-1072 |
| Cow position: | chr18:18944878-18945095 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 855-1089 |
| Cow position: | chr18:49007513-49007741 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 137, 8 |
| Conread position: | 862-1179 |
| Cow position: | chr18:35698710-35699041 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 864-1109 |
| Cow position: | chr18:35748482-35748726 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 58 |
| Conread position: | 864-1178 |
| Cow position: | chr18:42777791-42777462 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 107, 100 |
| Conread position: | 865-1093 |
| Cow position: | chr18:24559324-24559095 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 56, 103 |
| Conread position: | 870-1095 |
| Cow position: | chr18:32740931-32741148 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 188, 16 |
| Conread position: | 870-1105 |
| Cow position: | chr18:23613082-23612843 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 163 |
| Conread position: | 870-1118 |
| Cow position: | chr18:32646758-32647003 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 147, 45 |
| Conread position: | 870-1150 |
| Cow position: | chr18:29636761-29637040 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 99 |
| Conread position: | 878-1109 |
| Cow position: | chr18:47649834-47649612 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1721-1948 |
| Cow position: | chr18:2793769-2793988 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 136, 22 |
| Conread position: | 1739-1941 |
| Cow position: | chr18:1571041-1571247 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1749-1949 |
| Cow position: | chr18:17390803-17391011 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 1780-1942 |
| Cow position: | chr18:8170936-8171096 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1780-1947 |
| Cow position: | chr18:50632290-50632458 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 53 |
| Conread position: | 1780-1952 |
| Cow position: | chr18:35534995-35535167 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 1781-1952 |
| Cow position: | chr18:22789936-22790109 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.