Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052L23.3.5 |
| Conread position: | 1-121 |
| Cow position: | chr7:9465847-9465967 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-296 |
| Cow position: | chr7:4575217-4575394 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-296 |
| Cow position: | chr7:9466382-9466559 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 293-411 |
| Cow position: | chr7:9466769-9466887 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 113 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 411-522 |
| Cow position: | chr7:9468413-9468524 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 521-1118 |
| Cow position: | chr7:9468707-9469296 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 521, 192 |
| Conread position: | 822-1104 |
| Cow position: | chr7:7520461-7520729 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 824-1109 |
| Cow position: | chr7:6067177-6067469 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 120 |
| Conread position: | 826-1109 |
| Cow position: | chr7:31112397-31112128 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 167, 36 |
| Conread position: | 827-981 |
| Cow position: | chr7:6534965-6535115 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 827-1095 |
| Cow position: | chr7:13973151-13973416 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 827-1106 |
| Cow position: | chr7:31115998-31116271 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 159, 34 |
| Conread position: | 827-1109 |
| Cow position: | chr7:36066492-36066215 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 166, 36 |
| Conread position: | 827-1109 |
| Cow position: | chr7:37433107-37433385 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 130, 34 |
| Conread position: | 827-1113 |
| Cow position: | chr7:45118115-45118394 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 827-1118 |
| Cow position: | chr7:52878833-52878547 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 41 |
| Conread position: | 827-1154 |
| Cow position: | chr7:54103-53762 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 94, 35 |
| Conread position: | 827-1156 |
| Cow position: | chr7:51527741-51527399 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 827-1156 |
| Cow position: | chr7:64897714-64898052 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 828-1113 |
| Cow position: | chr7:38080396-38080678 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 126, 33 |
| Conread position: | 829-1094 |
| Cow position: | chr7:17392739-17392479 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 144, 32 |
| Conread position: | 829-1160 |
| Cow position: | chr7:21600582-21600239 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 226, 33 |
| Conread position: | 830-1092 |
| Cow position: | chr7:44077390-44077132 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 830-1109 |
| Cow position: | chr7:38675833-38676100 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 157, 31 |
| Conread position: | 834-1118 |
| Cow position: | chr7:58793425-58793157 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 5 |
| Conread position: | 865-1151 |
| Cow position: | chr7:41460553-41460853 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 866-1031 |
| Cow position: | chr7:14978607-14978445 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 866-1167 |
| Cow position: | chr7:59301631-59301327 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 884-1106 |
| Cow position: | chr7:21922111-21922327 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 52 |
| Conread position: | 1127-1264 |
| Cow position: | chr7:9469560-9469695 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 1323-1628 |
| Cow position: | chr7:9469907-9470220 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 183 |
| Conread position: | 1723-1948 |
| Cow position: | chr7:40308226-40308461 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 140 |
| Conread position: | 1726-1949 |
| Cow position: | chr7:50065838-50066059 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 134, 32 |
| Conread position: | 1738-1945 |
| Cow position: | chr7:54090756-54090551 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 1748-1949 |
| Cow position: | chr7:51644900-51644708 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 1755-1949 |
| Cow position: | chr7:36665585-36665382 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 1758-1934 |
| Cow position: | chr7:5914480-5914303 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 1760-1934 |
| Cow position: | chr7:29479769-29479600 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 1760-1945 |
| Cow position: | chr7:26909515-26909701 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 1768-1929 |
| Cow position: | chr7:39988978-39988811 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1768-1942 |
| Cow position: | chr7:39416146-39415974 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 1779-1949 |
| Cow position: | chr7:36996589-36996419 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1780-1949 |
| Cow position: | chr7:8658744-8658572 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1780-1949 |
| Cow position: | chr7:35088890-35088714 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1785-1949 |
| Cow position: | chr7:4765064-4764902 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 66, 85 |
Show alignments to all cow chromosomes.