Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8052L23.3.5 |
| Conread position: | 825-1109 |
| Cow position: | chr9:46284747-46284469 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 132, 36 |
| Conread position: | 826-1106 |
| Cow position: | chr9:35480958-35480690 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 826-1109 |
| Cow position: | chr9:50584151-50583873 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 131, 8 |
| Conread position: | 827-1093 |
| Cow position: | chr9:954506-954770 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 178, 35 |
| Conread position: | 827-1094 |
| Cow position: | chr9:50780426-50780694 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 827-1106 |
| Cow position: | chr9:6141892-6141615 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 827-1106 |
| Cow position: | chr9:63169276-63169005 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 827-1109 |
| Cow position: | chr9:30759013-30758735 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 133, 35 |
| Conread position: | 827-1109 |
| Cow position: | chr9:34039107-34039376 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 827-1109 |
| Cow position: | chr9:51554442-51554164 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 124, 27 |
| Conread position: | 827-1118 |
| Cow position: | chr9:11361816-11362099 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 165, 34 |
| Conread position: | 827-1118 |
| Cow position: | chr9:53747152-53747435 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 168, 36 |
| Conread position: | 827-1155 |
| Cow position: | chr9:22711604-22711924 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 210, 34 |
| Conread position: | 827-1167 |
| Cow position: | chr9:12692999-12692643 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 133, 34 |
| Conread position: | 827-1167 |
| Cow position: | chr9:46675719-46675360 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 828-1064 |
| Cow position: | chr9:42055138-42054887 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 119, 26 |
| Conread position: | 828-1104 |
| Cow position: | chr9:49859820-49860093 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 828-1105 |
| Cow position: | chr9:10885876-10886142 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 166, 33 |
| Conread position: | 829-1095 |
| Cow position: | chr9:12334723-12334464 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 829-1102 |
| Cow position: | chr9:46492285-46492556 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 829-1154 |
| Cow position: | chr9:50768521-50768198 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 829-1178 |
| Cow position: | chr9:41796183-41795837 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 137, 32 |
| Conread position: | 840-1109 |
| Cow position: | chr9:40278971-40278708 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 846-1178 |
| Cow position: | chr9:31261665-31262001 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 101, 124 |
| Conread position: | 855-1179 |
| Cow position: | chr9:15995151-15994821 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 180, 272 |
| Conread position: | 864-1080 |
| Cow position: | chr9:53072695-53072911 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 92, 103 |
| Conread position: | 864-1095 |
| Cow position: | chr9:34007054-34006828 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 878-1109 |
| Cow position: | chr9:16219479-16219249 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 56 |
| Conread position: | 884-1109 |
| Cow position: | chr9:9659435-9659204 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 87 |
| Conread position: | 1725-1949 |
| Cow position: | chr9:41728047-41728272 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 1739-1950 |
| Cow position: | chr9:6192663-6192444 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 141 |
| Conread position: | 1750-1949 |
| Cow position: | chr9:34286611-34286813 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 1751-1949 |
| Cow position: | chr9:38792827-38793030 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 1752-1942 |
| Cow position: | chr9:61022433-61022630 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1758-1941 |
| Cow position: | chr9:20090879-20091052 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1762-1949 |
| Cow position: | chr9:40603492-40603682 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 1780-1949 |
| Cow position: | chr9:4341315-4341145 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 1780-1949 |
| Cow position: | chr9:19718493-19718326 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1780-1949 |
| Cow position: | chr9:24887046-24887220 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1780-1949 |
| Cow position: | chr9:26345121-26344954 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 88 |
| Conread position: | 1780-1951 |
| Cow position: | chr9:28747677-28747504 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1780-1953 |
| Cow position: | chr9:26279332-26279153 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 163 |
Show alignments to all cow chromosomes.