Cow genome map

Conread name: Ss1.1-Pig4-TMW8052L23.3.5

Conread position: 802-1091
Cow position: chrX:24436748-24437035 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 119, 19

Conread position: 804-1153
Cow position: chrX:2713961-2713625 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 232
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 197, 12

Conread position: 817-1063
Cow position: chrX:38206768-38207018 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 139, 34

Conread position: 819-1093
Cow position: chrX:31265816-31266084 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 178
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 141, 43

Conread position: 820-951
Cow position: chrX:41243609-41243482 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 822-1032
Cow position: chrX:6083721-6083519 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 159, 7

Conread position: 823-1118
Cow position: chrX:17621768-17622060 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 82, 36

Conread position: 824-1167
Cow position: chrX:34795173-34795527 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 149, 38

Conread position: 825-1109
Cow position: chrX:38414245-38413955 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 59, 36

Conread position: 826-939
Cow position: chrX:29534374-29534264 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 826-1065
Cow position: chrX:32030613-32030378 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 166, 26

Conread position: 826-1095
Cow position: chrX:29475691-29475951 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 134, 35

Conread position: 826-1113
Cow position: chrX:4606677-4606966 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 35

Conread position: 826-1156
Cow position: chrX:16765852-16765529 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 222
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 134, 33

Conread position: 826-1171
Cow position: chrX:27379356-27379702 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 233
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 147, 121

Conread position: 827-987
Cow position: chrX:35228536-35228380 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 827-1082
Cow position: chrX:13231245-13231494 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 133, 34

Conread position: 827-1095
Cow position: chrX:39878375-39878106 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 120, 24

Conread position: 827-1095
Cow position: chrX:41241100-41241351 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 827-1105
Cow position: chrX:33779734-33779458 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 165, 32

Conread position: 827-1109
Cow position: chrX:4085069-4084801 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 146, 32

Conread position: 827-1109
Cow position: chrX:26700862-26701141 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 117, 33

Conread position: 827-1156
Cow position: chrX:7460107-7459765 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 232
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 121, 35

Conread position: 827-1167
Cow position: chrX:9293121-9293463 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 120, 34

Conread position: 828-1109
Cow position: chrX:29524469-29524755 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 30, 59

Conread position: 829-1094
Cow position: chrX:38173776-38174030 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 158, 32

Conread position: 829-1167
Cow position: chrX:21312897-21312562 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 225
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 110, 33

Conread position: 830-1167
Cow position: chrX:4280319-4280670 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 24

Conread position: 830-1178
Cow position: chrX:15756968-15757322 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 245
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 126, 29

Conread position: 833-1109
Cow position: chrX:24208116-24207840 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 180
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 29

Conread position: 836-1153
Cow position: chrX:10989772-10990097 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 156, 24

Conread position: 836-1167
Cow position: chrX:30732707-30732376 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 25

Conread position: 837-1109
Cow position: chrX:38890246-38890513 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 110, 18

Conread position: 838-1154
Cow position: chrX:7897339-7897014 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 134, 23

Conread position: 840-1167
Cow position: chrX:28818304-28818625 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 108, 26

Conread position: 864-1083
Cow position: chrX:43982247-43982455 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 157, 28

Conread position: 868-1085
Cow position: chrX:25974970-25974755 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 26

Conread position: 868-1109
Cow position: chrX:28822316-28822559 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 129, 53

Conread position: 876-1155
Cow position: chrX:25361206-25361496 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 63, 10

Conread position: 889-1167
Cow position: chrX:1120762-1121051 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 67, 81

Conread position: 1719-1949
Cow position: chrX:16836016-16836244 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 154
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 10, 63

Conread position: 1722-1949
Cow position: chrX:34991636-34991406 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 35

Conread position: 1723-1949
Cow position: chrX:34412120-34411888 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 9

Conread position: 1736-1949
Cow position: chrX:16984895-16984683 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 146
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 36, 45

Conread position: 1739-1950
Cow position: chrX:35986079-35985859 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 68

Conread position: 1741-1949
Cow position: chrX:27668706-27668916 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 39, 22

Conread position: 1741-1949
Cow position: chrX:34836817-34837022 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 1759-1949
Cow position: chrX:31480204-31480013 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 160

Conread position: 1760-1934
Cow position: chrX:20957477-20957295 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 1760-1948
Cow position: chrX:11325869-11326054 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 108

Conread position: 1760-1949
Cow position: chrX:20584547-20584370 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 1768-1953
Cow position: chrX:20666675-20666865 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 12

Conread position: 1780-1924
Cow position: chrX:14135892-14135745 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 1780-1942
Cow position: chrX:27145816-27145653 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 109, 63

Conread position: 1780-1948
Cow position: chrX:20583877-20583709 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 81, 20

Conread position: 1780-1949
Cow position: chrX:2936170-2935999 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 1780-1949
Cow position: chrX:8869187-8869360 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 1780-1949
Cow position: chrX:22115097-22115275 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 1780-1971
Cow position: chrX:6480378-6480576 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 96, 170

Conread position: 1785-1949
Cow position: chrX:34314233-34314066 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 86, 0

Show alignments to all cow chromosomes.