Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053I23.5 |
| Conread position: | 1-351 |
| Cow position: | chr17:22452018-22451668 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 185, 198 |
| Conread position: | 1-496 |
| Cow position: | chr17:22551985-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-549 |
| Cow position: | chr17:22452354-22451805 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 89 |
| Conread position: | 1-565 |
| Cow position: | chr17:22499284-22498717 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 520, 527 |
| Conread position: | 1-565 |
| Cow position: | chr17:22552489-22551922 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 98 |
| Conread position: | 1-565 |
| Cow position: | chr17:22552573-22552006 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 205 |
| Conread position: | 1-565 |
| Cow position: | chr17:22552909-22552342 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 513, 540 |
| Conread position: | 1-574 |
| Cow position: | chr17:22499116-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 559 |
| Conread position: | 1-574 |
| Cow position: | chr17:22552069-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 361 |
| Conread position: | 1-577 |
| Cow position: | chr17:22552321-22551744 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 267 |
| Conread position: | 1-600 |
| Cow position: | chr17:22552825-22552228 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 193 |
| Conread position: | 1-602 |
| Cow position: | chr17:22473361-22473961 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 575 |
| Conread position: | 1-602 |
| Cow position: | chr17:22552237-22551638 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 513, 541 |
| Conread position: | 1-602 |
| Cow position: | chr17:22552405-22551806 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 1-602 |
| Cow position: | chr17:22552657-22552058 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 291 |
| Conread position: | 1-602 |
| Cow position: | chr17:22553077-22552478 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 531 |
| Conread position: | 1-602 |
| Cow position: | chr17:22589823-22589224 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 185 |
| Conread position: | 1-602 |
| Cow position: | chr17:22590075-22589476 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 299 |
| Conread position: | 1-602 |
| Cow position: | chr17:22590243-22589644 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 543, 559 |
| Conread position: | 1-616 |
| Cow position: | chr17:22552153-22551540 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 444 |
| Conread position: | 1-618 |
| Cow position: | chr17:22589907-22589292 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 193 |
| Conread position: | 1-619 |
| Cow position: | chr17:22473277-22473893 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 538 |
| Conread position: | 12-512 |
| Cow position: | chr17:22499189-22498689 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 425 |
| Conread position: | 24-320 |
| Cow position: | chr17:22589464-22589170 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 24-566 |
| Cow position: | chr17:22552970-22552425 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 519, 0 |
| Conread position: | 29-495 |
| Cow position: | chr17:22499004-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 292 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 261, 257 |
| Conread position: | 29-602 |
| Cow position: | chr17:22452411-22451839 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 146 |
| Conread position: | 30-414 |
| Cow position: | chr17:22498835-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 87, 102 |
| Conread position: | 31-512 |
| Cow position: | chr17:22590297-22589816 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 168 |
| Conread position: | 35-397 |
| Cow position: | chr17:22589537-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 147, 159 |
| Conread position: | 38-566 |
| Cow position: | chr17:22499331-22498800 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 39-565 |
| Cow position: | chr17:22552703-22552174 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 335 |
| Conread position: | 47-510 |
| Cow position: | chr17:22452140-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 47-519 |
| Cow position: | chr17:22553115-22552643 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 329 |
| Conread position: | 47-520 |
| Cow position: | chr17:22452056-22451583 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 302 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 47-602 |
| Cow position: | chr17:22473242-22473792 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 21 |
| Conread position: | 50-433 |
| Cow position: | chr17:22589606-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-510 |
| Cow position: | chr17:22553177-22552736 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 373, 12 |
| Conread position: | 79-511 |
| Cow position: | chr17:22499374-22498942 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-511 |
| Cow position: | chr17:22499409-22499026 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 199-574 |
| Cow position: | chr17:22553131-22552756 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 340, 361 |
| Conread position: | 276-537 |
| Cow position: | chr17:22590304-22590043 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 162, 169 |
| Conread position: | 290-602 |
| Cow position: | chr17:22499418-22499105 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 273 |
Show alignments to all cow chromosomes.