Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053I23.5 |
| Conread position: | 1-410 |
| Cow position: | chr19:23597309-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 1-415 |
| Cow position: | chr19:20635437-20635023 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-442 |
| Cow position: | chr19:14948438-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 34 |
| Conread position: | 1-491 |
| Cow position: | chr19:20678315-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 352 |
| Conread position: | 1-498 |
| Cow position: | chr19:23613880-23614377 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 447 |
| Conread position: | 1-512 |
| Cow position: | chr19:14959625-14959123 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 319 |
| Conread position: | 1-512 |
| Cow position: | chr19:20678147-20678658 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 1-514 |
| Cow position: | chr19:23650002-23650513 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 113 |
| Conread position: | 1-517 |
| Cow position: | chr19:14940100-14940617 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 100 |
| Conread position: | 1-517 |
| Cow position: | chr19:14940352-14940869 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 446 |
| Conread position: | 1-519 |
| Cow position: | chr19:14960279-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 128 |
| Conread position: | 1-519 |
| Cow position: | chr19:20635605-20635087 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-526 |
| Cow position: | chr19:23649918-23650443 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 1-537 |
| Cow position: | chr19:23613796-23614331 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 109 |
| Conread position: | 1-539 |
| Cow position: | chr19:14940520-14941057 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 1-542 |
| Cow position: | chr19:23649582-23650123 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 534, 527 |
| Conread position: | 1-551 |
| Cow position: | chr19:14940436-14940987 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 409 |
| Conread position: | 1-551 |
| Cow position: | chr19:14960447-14959898 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 284 |
| Conread position: | 1-564 |
| Cow position: | chr19:23614552-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 190 |
| Conread position: | 1-565 |
| Cow position: | chr19:43570277-43569715 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 534, 35 |
| Conread position: | 1-578 |
| Cow position: | chr19:23597141-23597717 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 323 |
| Conread position: | 1-597 |
| Cow position: | chr19:23614048-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 1-600 |
| Cow position: | chr19:14940184-14940781 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 537 |
| Conread position: | 1-600 |
| Cow position: | chr19:23613544-23614141 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 101 |
| Conread position: | 1-600 |
| Cow position: | chr19:23613964-23614561 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 100 |
| Conread position: | 1-602 |
| Cow position: | chr19:20677643-20678242 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 274 |
| Conread position: | 1-602 |
| Cow position: | chr19:20677727-20678326 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 567 |
| Conread position: | 1-602 |
| Cow position: | chr19:20678063-20678662 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 533 |
| Conread position: | 1-602 |
| Cow position: | chr19:23614468-23615067 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 537, 531 |
| Conread position: | 1-615 |
| Cow position: | chr19:14960029-14959433 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 217 |
| Conread position: | 1-615 |
| Cow position: | chr19:23596892-23597501 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 537, 141 |
| Conread position: | 1-617 |
| Cow position: | chr19:20677895-20678509 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 115 |
| Conread position: | 1-617 |
| Cow position: | chr19:23614216-23614830 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 110 |
| Conread position: | 2-486 |
| Cow position: | chr19:14960194-14959714 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 3-505 |
| Cow position: | chr19:43570193-43569694 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 3-512 |
| Cow position: | chr19:14940018-14940527 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-519 |
| Cow position: | chr19:23614134-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 193 |
| Conread position: | 3-551 |
| Cow position: | chr19:23613714-23614263 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 237 |
| Conread position: | 3-578 |
| Cow position: | chr19:23649668-23650243 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 99 |
| Conread position: | 3-616 |
| Cow position: | chr19:23649416-23650027 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 557 |
| Conread position: | 4-520 |
| Cow position: | chr19:23613378-23613895 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 6-602 |
| Cow position: | chr19:20677564-20678158 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 21-566 |
| Cow position: | chr19:20677330-20677875 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 332 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 514, 20 |
| Conread position: | 23-553 |
| Cow position: | chr19:14939954-14940483 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 24-538 |
| Cow position: | chr19:23614323-23614837 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 27-602 |
| Cow position: | chr19:23613654-23614227 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 257 |
| Conread position: | 30-512 |
| Cow position: | chr19:23613489-23613971 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 256 |
| Conread position: | 30-512 |
| Cow position: | chr19:23614413-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-541 |
| Cow position: | chr19:14959512-14959016 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 30-574 |
| Cow position: | chr19:23649863-23650407 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 514, 532 |
| Conread position: | 38-551 |
| Cow position: | chr19:23649367-23649881 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 239 |
| Conread position: | 38-570 |
| Cow position: | chr19:23649283-23649816 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 503, 494 |
| Conread position: | 39-526 |
| Cow position: | chr19:20635735-20635249 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 44-482 |
| Cow position: | chr19:14959255-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-519 |
| Cow position: | chr19:43570395-43569930 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 47-526 |
| Cow position: | chr19:14948476-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 48-551 |
| Cow position: | chr19:23649797-23650301 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 190 |
| Conread position: | 48-612 |
| Cow position: | chr19:23649545-23650107 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 496, 512 |
| Conread position: | 50-511 |
| Cow position: | chr19:20635640-20635179 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 220 |
| Conread position: | 50-607 |
| Cow position: | chr19:20677440-20677995 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 349 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 156, 136 |
| Conread position: | 61-519 |
| Cow position: | chr19:23597032-23597491 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 61-549 |
| Cow position: | chr19:23596868-23597354 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 164 |
| Conread position: | 69-537 |
| Cow position: | chr19:23613360-23613828 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-523 |
| Cow position: | chr19:14915974-14916424 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 30, 120 |
| Conread position: | 70-551 |
| Cow position: | chr19:43570452-43569981 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 78-512 |
| Cow position: | chr19:20677303-20677734 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 150, 25 |
| Conread position: | 80-494 |
| Cow position: | chr19:14959712-14959300 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 290, 61 |
| Conread position: | 81-602 |
| Cow position: | chr19:23613288-23613807 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 127-511 |
| Cow position: | chr19:14959256-14958878 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 137 |
| Conread position: | 134-518 |
| Cow position: | chr19:14915955-14916337 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 136-618 |
| Cow position: | chr19:23596859-23597336 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 323, 174 |
| Conread position: | 163-616 |
| Cow position: | chr19:14960453-14960004 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 296 |
| Conread position: | 167-602 |
| Cow position: | chr19:20677308-20677738 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 373, 51 |
| Conread position: | 198-499 |
| Cow position: | chr19:14959678-14959379 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 207-542 |
| Cow position: | chr19:14948484-14948150 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 212-537 |
| Cow position: | chr19:20635646-20635321 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 313, 317 |
| Conread position: | 215-602 |
| Cow position: | chr19:20635727-20635342 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 225-529 |
| Cow position: | chr19:14960475-14960171 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-615 |
| Cow position: | chr19:14960477-14960171 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 36, 55 |
Show alignments to all cow chromosomes.