Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053I23.5 |
| Conread position: | 1-292 |
| Cow position: | chr23:24522458-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-303 |
| Cow position: | chr23:24654143-24654444 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 1-318 |
| Cow position: | chr23:24654059-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 267 |
| Conread position: | 1-369 |
| Cow position: | chr23:24522542-24522174 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 269, 273 |
| Conread position: | 1-384 |
| Cow position: | chr23:24560444-24560061 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 318, 328 |
| Conread position: | 1-401 |
| Cow position: | chr23:25626641-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 1-408 |
| Cow position: | chr23:25724101-25723696 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 289 |
| Conread position: | 1-415 |
| Cow position: | chr23:24626334-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 273 |
| Conread position: | 1-488 |
| Cow position: | chr23:24560612-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-518 |
| Cow position: | chr23:24639410-24639927 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-520 |
| Cow position: | chr23:24547136-24546617 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 273 |
| Conread position: | 1-523 |
| Cow position: | chr23:24522707-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-523 |
| Cow position: | chr23:24535935-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 0 |
| Conread position: | 1-523 |
| Cow position: | chr23:25660177-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 198 |
| Conread position: | 1-530 |
| Cow position: | chr23:24536019-24535490 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-531 |
| Cow position: | chr23:24639578-24640108 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 447 |
| Conread position: | 1-550 |
| Cow position: | chr23:25698630-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 226 |
| Conread position: | 1-551 |
| Cow position: | chr23:24547304-24546753 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 269 |
| Conread position: | 1-565 |
| Cow position: | chr23:24560696-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 0 |
| Conread position: | 1-568 |
| Cow position: | chr23:24547220-24546654 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 269 |
| Conread position: | 1-578 |
| Cow position: | chr23:24639494-24640071 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 439, 426 |
| Conread position: | 1-600 |
| Cow position: | chr23:24560864-24560267 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 567 |
| Conread position: | 1-600 |
| Cow position: | chr23:24639326-24639923 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 1-602 |
| Cow position: | chr23:24522791-24522195 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 181 |
| Conread position: | 1-602 |
| Cow position: | chr23:25626056-25626652 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 34 |
| Conread position: | 1-616 |
| Cow position: | chr23:24560780-24560167 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 1-616 |
| Cow position: | chr23:24639242-24639855 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 100 |
| Conread position: | 30-488 |
| Cow position: | chr23:25626586-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 71 |
| Conread position: | 30-499 |
| Cow position: | chr23:24626279-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 0 |
| Conread position: | 30-615 |
| Cow position: | chr23:25698685-25698102 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 239 |
| Conread position: | 30-616 |
| Cow position: | chr23:25626169-25626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 365 |
| Conread position: | 38-512 |
| Cow position: | chr23:25626009-25626483 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 377 |
| Conread position: | 39-382 |
| Cow position: | chr23:24522069-24521738 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 301, 62 |
| Conread position: | 48-318 |
| Cow position: | chr23:25660476-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 230, 235 |
| Conread position: | 51-486 |
| Cow position: | chr23:25660311-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 312 |
| Conread position: | 54-496 |
| Cow position: | chr23:25660146-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 215 |
| Conread position: | 59-550 |
| Cow position: | chr23:24639216-24639708 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 175 |
| Conread position: | 60-440 |
| Cow position: | chr23:24522567-24522187 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-548 |
| Cow position: | chr23:25626535-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 43 |
| Conread position: | 60-565 |
| Cow position: | chr23:24522814-24522311 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 317 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 482, 24 |
| Conread position: | 61-523 |
| Cow position: | chr23:24654034-24654491 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 383 |
| Conread position: | 68-299 |
| Cow position: | chr23:24521969-24521737 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 69-616 |
| Cow position: | chr23:24547320-24546775 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 70-616 |
| Cow position: | chr23:24560879-24560335 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 72-518 |
| Cow position: | chr23:24536032-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 59 |
| Conread position: | 73-495 |
| Cow position: | chr23:25724113-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 109-570 |
| Cow position: | chr23:24626274-24626735 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 459 |
| Conread position: | 122-566 |
| Cow position: | chr23:24547351-24546904 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 130-551 |
| Cow position: | chr23:24560903-24560481 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 138-523 |
| Cow position: | chr23:25660146-25660531 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 226 |
| Conread position: | 142-571 |
| Cow position: | chr23:24536046-24535616 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 172-512 |
| Cow position: | chr23:25724099-25723758 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 280 |
| Conread position: | 205-512 |
| Cow position: | chr23:25626008-25626315 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-616 |
| Cow position: | chr23:24560910-24560503 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 337, 363 |
| Conread position: | 211-512 |
| Cow position: | chr23:25724143-25723842 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 218-566 |
| Cow position: | chr23:25660142-25660493 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 236, 227 |
| Conread position: | 221-616 |
| Cow position: | chr23:24536051-24535658 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 320, 339 |
| Conread position: | 225-609 |
| Cow position: | chr23:25625946-25626326 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 316, 17 |
| Conread position: | 230-551 |
| Cow position: | chr23:24654036-24654358 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 312, 0 |
| Conread position: | 327-612 |
| Cow position: | chr23:25724111-25723828 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 212, 233 |
Show alignments to all cow chromosomes.