Cow genome map

Conread name: Ss1.1-Pig4-TMW8053I23.5

Conread position: 1-266
Cow position: chr25:33157028-33156764 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 238, 0

Conread position: 1-319
Cow position: chr25:33157112-33156794 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-322
Cow position: chr25:346473-346794 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 206
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 125, 131

Conread position: 1-398
Cow position: chr25:33145039-33145436 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 256
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 342, 364

Conread position: 1-400
Cow position: chr25:36801568-36801967 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 249
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 375, 365

Conread position: 1-405
Cow position: chr25:33127827-33128231 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 330

Conread position: 1-427
Cow position: chr25:33299428-33299850 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 365

Conread position: 1-472
Cow position: chr25:23420408-23420879 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-473
Cow position: chr25:326354-326826 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 286
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 130, 111

Conread position: 1-482
Cow position: chr25:33127743-33128224 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-499
Cow position: chr25:34762938-34763433 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 296
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 164, 178

Conread position: 1-512
Cow position: chr25:33144874-33145382 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 138

Conread position: 1-512
Cow position: chr25:34447215-34447724 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 283

Conread position: 1-519
Cow position: chr25:34433549-34434058 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 321
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 58, 0

Conread position: 1-529
Cow position: chr25:33157364-33156836 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-562
Cow position: chr25:36801400-36801962 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 112

Conread position: 1-565
Cow position: chr25:34769847-34769280 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 1-566
Cow position: chr25:33299176-33299744 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 20

Conread position: 1-568
Cow position: chr25:34769763-34769196 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-574
Cow position: chr25:326522-327101 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 312

Conread position: 1-580
Cow position: chr25:33298840-33299420 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 39

Conread position: 1-581
Cow position: chr25:36800656-36801237 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 194

Conread position: 1-600
Cow position: chr25:326606-327210 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 373
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 107, 99

Conread position: 1-602
Cow position: chr25:33157448-33156849 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 27

Conread position: 1-602
Cow position: chr25:34770099-34769500 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 25

Conread position: 1-616
Cow position: chr25:33298924-33299537 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 570

Conread position: 1-617
Cow position: chr25:34447047-34447661 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 323

Conread position: 1-618
Cow position: chr25:34770015-34769400 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 558, 538

Conread position: 2-512
Cow position: chr25:33306021-33305518 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 319
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 35, 76

Conread position: 3-618
Cow position: chr25:34769929-34769316 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 99

Conread position: 6-512
Cow position: chr25:33306432-33305932 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 320
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 46

Conread position: 8-574
Cow position: chr25:36800579-36801145 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 281

Conread position: 11-549
Cow position: chr25:34446889-34447428 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 23-340
Cow position: chr25:18642208-18641888 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 209
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 103, 108

Conread position: 23-393
Cow position: chr25:34714165-34714535 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 241
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 215, 204

Conread position: 24-566
Cow position: chr25:36801339-36801884 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 171

Conread position: 30-511
Cow position: chr25:33299373-33299850 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 69

Conread position: 31-552
Cow position: chr25:34433495-34434010 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 318
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 276, 110

Conread position: 31-602
Cow position: chr25:33298618-33299187 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 168

Conread position: 35-511
Cow position: chr25:33305905-33305434 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 308
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 149, 83

Conread position: 36-321
Cow position: chr25:326983-327268 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 71, 80

Conread position: 36-518
Cow position: chr25:326725-327215 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 312
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 161, 218

Conread position: 37-440
Cow position: chr25:22235890-22236292 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 250
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 87

Conread position: 37-512
Cow position: chr25:34713927-34714402 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 293
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 401, 417

Conread position: 38-514
Cow position: chr25:36800861-36801337 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 306

Conread position: 38-562
Cow position: chr25:33299297-33299822 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 499, 0

Conread position: 38-566
Cow position: chr25:36801113-36801632 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 328
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 55

Conread position: 38-574
Cow position: chr25:33299045-33299581 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 499, 522

Conread position: 38-615
Cow position: chr25:33298793-33299368 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 323

Conread position: 39-400
Cow position: chr25:22235976-22236337 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 222
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 161, 156

Conread position: 39-499
Cow position: chr25:33157242-33156783 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 253

Conread position: 39-574
Cow position: chr25:33298542-33299077 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 39-636
Cow position: chr25:33305421-33304835 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 17

Conread position: 47-551
Cow position: chr25:34447009-34447514 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 485, 0

Conread position: 47-600
Cow position: chr25:34732537-34731985 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 330
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 62, 68

Conread position: 47-602
Cow position: chr25:33299138-33299691 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 308

Conread position: 48-307
Cow position: chr25:34433008-34433266 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 218, 239

Conread position: 48-537
Cow position: chr25:34714106-34714591 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 289
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 428, 0

Conread position: 50-511
Cow position: chr25:36801533-36801990 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 289
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 296, 311

Conread position: 50-578
Cow position: chr25:23420054-23420565 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 335
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 232, 22

Conread position: 51-537
Cow position: chr25:33298470-33298956 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 50

Conread position: 51-537
Cow position: chr25:34447181-34447667 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 313

Conread position: 51-574
Cow position: chr25:33298722-33299245 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 316

Conread position: 52-602
Cow position: chr25:36800539-36801087 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 49

Conread position: 54-539
Cow position: chr25:23420377-23420862 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 48

Conread position: 56-523
Cow position: chr25:36800381-36800842 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 281
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 138, 42

Conread position: 57-508
Cow position: chr25:34732359-34731908 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 263
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 133, 142

Conread position: 58-512
Cow position: chr25:34432772-34433220 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 284
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 95, 121

Conread position: 60-551
Cow position: chr25:33144851-33145338 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 14

Conread position: 60-582
Cow position: chr25:36800799-36801322 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 71

Conread position: 63-600
Cow position: chr25:34770121-34769586 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 478, 497

Conread position: 68-472
Cow position: chr25:346456-346860 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 254
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 178, 184

Conread position: 68-574
Cow position: chr25:34762837-34763340 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 300
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 47

Conread position: 69-519
Cow position: chr25:34714043-34714493 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 21

Conread position: 70-434
Cow position: chr25:34732598-34732234 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 236
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 31

Conread position: 70-581
Cow position: chr25:33157463-33156951 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 38

Conread position: 75-538
Cow position: chr25:33127733-33128196 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 80-553
Cow position: chr25:23420319-23420791 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 469, 0

Conread position: 84-433
Cow position: chr25:33145038-33145387 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 237
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 101, 110

Conread position: 107-446
Cow position: chr25:18642208-18641866 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 219
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 139, 182

Conread position: 109-616
Cow position: chr25:33157507-33157003 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 5

Conread position: 117-530
Cow position: chr25:34433497-34433906 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 110

Conread position: 117-564
Cow position: chr25:36800520-36800970 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 282
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 114, 107

Conread position: 125-351
Cow position: chr25:34433001-34433227 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 127-519
Cow position: chr25:22235896-22236288 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 250
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 51, 66

Conread position: 130-402
Cow position: chr25:326993-327265 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 77, 65

Conread position: 132-541
Cow position: chr25:34763234-34763640 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 251
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 207, 217

Conread position: 138-517
Cow position: chr25:34732614-34732235 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 239
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 144, 131

Conread position: 141-511
Cow position: chr25:33144846-33145213 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 237
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 296, 184

Conread position: 143-473
Cow position: chr25:366724-367054 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 151, 157

Conread position: 143-566
Cow position: chr25:346447-346869 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 275
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 151, 157

Conread position: 144-524
Cow position: chr25:22235829-22236209 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 58, 48

Conread position: 145-486
Cow position: chr25:326924-327265 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 230
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 43

Conread position: 163-617
Cow position: chr25:33127652-33128105 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 296
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 41

Conread position: 168-512
Cow position: chr25:34713890-34714234 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 217
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 26

Conread position: 170-616
Cow position: chr25:34446880-34447324 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 283
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 40, 50

Conread position: 186-523
Cow position: chr25:18642213-18641873 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 219
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 86, 93

Conread position: 187-578
Cow position: chr25:34770165-34769774 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 8

Conread position: 209-513
Cow position: chr25:34762810-34763115 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 191
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 293, 0

Conread position: 211-438
Cow position: chr25:34433003-34433231 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 223, 0

Conread position: 219-526
Cow position: chr25:414781-414482 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 201
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 16

Conread position: 221-512
Cow position: chr25:34732615-34732324 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 239, 227

Conread position: 225-519
Cow position: chr25:33144846-33145137 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 184
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 192, 0

Conread position: 227-541
Cow position: chr25:366724-367038 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 202
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 233-445
Cow position: chr25:427334-427546 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 380-603
Cow position: chr25:34433004-34433225 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 161, 188

Show alignments to all cow chromosomes.