Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053I23.5 |
| Conread position: | 1-247 |
| Cow position: | chr28:7810700-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-268 |
| Cow position: | chr28:33210337-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 92, 114 |
| Conread position: | 1-317 |
| Cow position: | chr28:9253296-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-401 |
| Cow position: | chr28:7758433-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 346, 0 |
| Conread position: | 1-421 |
| Cow position: | chr28:9290277-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 99 |
| Conread position: | 1-507 |
| Cow position: | chr28:11333860-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 394, 0 |
| Conread position: | 1-529 |
| Cow position: | chr28:34695937-34696465 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 316 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-529 |
| Cow position: | chr28:34696021-34696549 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-551 |
| Cow position: | chr28:7757609-7758160 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 446 |
| Conread position: | 1-551 |
| Cow position: | chr28:7757777-7758328 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 278 |
| Conread position: | 1-577 |
| Cow position: | chr28:9298926-9299486 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 69 |
| Conread position: | 1-581 |
| Cow position: | chr28:7810289-7810861 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 248 |
| Conread position: | 1-581 |
| Cow position: | chr28:7810373-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 154 |
| Conread position: | 4-404 |
| Cow position: | chr28:33210255-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 7, 98 |
| Conread position: | 7-415 |
| Cow position: | chr28:7810537-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 23-565 |
| Cow position: | chr28:34679595-34679064 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 49 |
| Conread position: | 24-472 |
| Cow position: | chr28:7757884-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 268 |
| Conread position: | 24-537 |
| Cow position: | chr28:9290136-9290643 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 72 |
| Conread position: | 24-602 |
| Cow position: | chr28:7757464-7758040 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 520, 536 |
| Conread position: | 24-619 |
| Cow position: | chr28:7757968-7758545 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 520, 370 |
| Conread position: | 30-602 |
| Cow position: | chr28:7757722-7758292 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 420 |
| Conread position: | 37-496 |
| Cow position: | chr28:11333992-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 38-401 |
| Cow position: | chr28:9253249-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-488 |
| Cow position: | chr28:9299283-9299728 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 327, 290 |
| Conread position: | 38-520 |
| Cow position: | chr28:9298712-9299191 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 102 |
| Conread position: | 42-616 |
| Cow position: | chr28:9253001-9253573 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 232 |
| Conread position: | 45-355 |
| Cow position: | chr28:9290404-9290713 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 45-517 |
| Cow position: | chr28:11334236-11333763 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 469, 0 |
| Conread position: | 47-527 |
| Cow position: | chr28:34673426-34673906 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 227, 236 |
| Conread position: | 47-613 |
| Cow position: | chr28:7757403-7757968 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 513 |
| Conread position: | 48-596 |
| Cow position: | chr28:11334065-11333519 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 333 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 493, 512 |
| Conread position: | 48-602 |
| Cow position: | chr28:9290076-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 140 |
| Conread position: | 49-602 |
| Cow position: | chr28:9252593-9253139 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 51-435 |
| Cow position: | chr28:11333894-11333510 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 51-488 |
| Cow position: | chr28:7758399-7758835 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 0 |
| Conread position: | 51-488 |
| Cow position: | chr28:9253178-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 223 |
| Conread position: | 51-505 |
| Cow position: | chr28:9290245-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 23 |
| Conread position: | 51-511 |
| Cow position: | chr28:9298643-9299098 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 51-512 |
| Cow position: | chr28:7757575-7758036 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 236 |
| Conread position: | 51-530 |
| Cow position: | chr28:11334146-11333667 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 51-530 |
| Cow position: | chr28:34695903-34696382 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 277, 273 |
| Conread position: | 51-551 |
| Cow position: | chr28:9253094-9253595 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 51-566 |
| Cow position: | chr28:9298308-9298821 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 215, 194 |
| Conread position: | 56-511 |
| Cow position: | chr28:9299217-9299669 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 175, 184 |
| Conread position: | 59-446 |
| Cow position: | chr28:33210227-33210615 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 334, 0 |
| Conread position: | 60-551 |
| Cow position: | chr28:7758324-7758815 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 227 |
| Conread position: | 63-530 |
| Cow position: | chr28:34695832-34696298 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 155, 13 |
| Conread position: | 69-518 |
| Cow position: | chr28:34673364-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 118, 126 |
| Conread position: | 79-499 |
| Cow position: | chr28:7810526-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-551 |
| Cow position: | chr28:7810283-7810747 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 105 |
| Conread position: | 108-602 |
| Cow position: | chr28:9252898-9253391 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 134-601 |
| Cow position: | chr28:9289830-9290287 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 138-613 |
| Cow position: | chr28:7757164-7757632 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 136, 129 |
| Conread position: | 140-486 |
| Cow position: | chr28:9299217-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 152 |
| Conread position: | 140-578 |
| Cow position: | chr28:33210223-33210663 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 142-523 |
| Cow position: | chr28:34673353-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 143-565 |
| Cow position: | chr28:7758323-7758748 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 131 |
| Conread position: | 145-497 |
| Cow position: | chr28:34695829-34696181 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 157, 144 |
| Conread position: | 146-598 |
| Cow position: | chr28:7757334-7757784 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 186-551 |
| Cow position: | chr28:34679600-34679233 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 97, 47 |
Show alignments to all cow chromosomes.