Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053I23.5 |
| Conread position: | 1-249 |
| Cow position: | chr3:68027537-68027784 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 238, 209 |
| Conread position: | 1-371 |
| Cow position: | chr3:68027369-68027739 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 114, 101 |
| Conread position: | 1-441 |
| Cow position: | chr3:62743038-62743473 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-485 |
| Cow position: | chr3:62722048-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-497 |
| Cow position: | chr3:77351048-77350564 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 314 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 1-512 |
| Cow position: | chr3:62742304-62742809 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 1-537 |
| Cow position: | chr3:68027201-68027737 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-540 |
| Cow position: | chr3:62722132-62721593 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-550 |
| Cow position: | chr3:68027033-68027583 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 1-564 |
| Cow position: | chr3:68045794-68046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 0 |
| Conread position: | 1-572 |
| Cow position: | chr3:77351299-77350735 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 360 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 1-582 |
| Cow position: | chr3:62722300-62721718 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 1-619 |
| Cow position: | chr3:68045710-68046326 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 198 |
| Conread position: | 2-388 |
| Cow position: | chr3:62743118-62743504 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-619 |
| Cow position: | chr3:68027118-68027733 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 536, 582 |
| Conread position: | 3-618 |
| Cow position: | chr3:62722381-62721769 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 3-633 |
| Cow position: | chr3:62742389-62743014 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 252 |
| Conread position: | 4-512 |
| Cow position: | chr3:68045628-68046137 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 25-616 |
| Cow position: | chr3:62722192-62721603 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 78 |
| Conread position: | 30-225 |
| Cow position: | chr3:16020409-16020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-517 |
| Cow position: | chr3:62742916-62743381 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 30-520 |
| Cow position: | chr3:62742831-62743300 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 168 |
| Conread position: | 47-428 |
| Cow position: | chr3:77350841-77350473 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 47-489 |
| Cow position: | chr3:68027331-68027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 54 |
| Conread position: | 47-512 |
| Cow position: | chr3:77351086-77350631 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 49 |
| Conread position: | 68-519 |
| Cow position: | chr3:77351148-77350705 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 293 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 169, 49 |
| Conread position: | 69-602 |
| Cow position: | chr3:68045610-68046141 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 80-484 |
| Cow position: | chr3:62743033-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 105-602 |
| Cow position: | chr3:62742239-62742731 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 321 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 117-512 |
| Cow position: | chr3:68026981-68027376 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 117-512 |
| Cow position: | chr3:68045574-68045969 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 133-388 |
| Cow position: | chr3:16020467-16020219 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.