Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053I23.5 |
| Conread position: | 1-485 |
| Cow position: | chr6:49396486-49396970 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-501 |
| Cow position: | chr6:49396234-49396735 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 1-530 |
| Cow position: | chr6:49396072-49396595 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 1-536 |
| Cow position: | chr6:49395988-49396517 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 1-539 |
| Cow position: | chr6:49340933-49341469 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 501, 0 |
| Conread position: | 1-541 |
| Cow position: | chr6:49396402-49396941 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 195, 206 |
| Conread position: | 1-574 |
| Cow position: | chr6:49340849-49341422 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 1-578 |
| Cow position: | chr6:49396318-49396895 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 354 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 110, 119 |
| Conread position: | 1-615 |
| Cow position: | chr6:49340429-49341041 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 559 |
| Conread position: | 2-536 |
| Cow position: | chr6:49395905-49396433 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 325 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 209, 194 |
| Conread position: | 6-334 |
| Cow position: | chr6:49396659-49396987 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-519 |
| Cow position: | chr6:49340793-49341283 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 250 |
| Conread position: | 29-581 |
| Cow position: | chr6:49340709-49341262 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 39-581 |
| Cow position: | chr6:49340551-49341094 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 496, 492 |
| Conread position: | 45-244 |
| Cow position: | chr6:39664465-39664266 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-581 |
| Cow position: | chr6:49340391-49340926 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 231 |
| Conread position: | 47-617 |
| Cow position: | chr6:49340643-49341211 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 222 |
| Conread position: | 51-530 |
| Cow position: | chr6:49428975-49429454 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 84-497 |
| Cow position: | chr6:49396233-49396646 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-534 |
| Cow position: | chr6:49340150-49340541 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 130-566 |
| Cow position: | chr6:49340390-49340829 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 141-490 |
| Cow position: | chr6:49395878-49396225 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 186-612 |
| Cow position: | chr6:49340362-49340786 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 320-496 |
| Cow position: | chr6:39664444-39664266 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 45 |
Show alignments to all cow chromosomes.