Cow genome map

Conread name: Ss1.1-Pig4-TMW8053I23.5

Conread position: 1-285
Cow position: chr7:8325850-8326133 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 281, 0

Conread position: 1-322
Cow position: chr7:42878579-42878256 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 210
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 307, 0

Conread position: 1-350
Cow position: chr7:8243747-8244093 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 235
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 120, 105

Conread position: 1-388
Cow position: chr7:42878663-42878276 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 250
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 1-444
Cow position: chr7:18390355-18390798 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 281
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 420, 411

Conread position: 1-485
Cow position: chr7:3180394-3180877 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 132

Conread position: 1-495
Cow position: chr7:8277957-8278451 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 310
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 19

Conread position: 1-512
Cow position: chr7:8325178-8325689 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 111

Conread position: 1-516
Cow position: chr7:42879251-42878735 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 114

Conread position: 1-519
Cow position: chr7:8242824-8243342 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 327
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 203, 185

Conread position: 1-519
Cow position: chr7:8277873-8278391 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 118

Conread position: 1-519
Cow position: chr7:11600994-11600476 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 157

Conread position: 1-521
Cow position: chr7:8324758-8325278 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 206

Conread position: 1-521
Cow position: chr7:8324926-8325446 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 39

Conread position: 1-521
Cow position: chr7:8325598-8326118 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 131

Conread position: 1-524
Cow position: chr7:8277453-8277976 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 328
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 433, 458

Conread position: 1-526
Cow position: chr7:18390271-18390796 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 492

Conread position: 1-551
Cow position: chr7:42878831-42878280 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 375

Conread position: 1-565
Cow position: chr7:3180226-3180793 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 542, 0

Conread position: 1-565
Cow position: chr7:42878999-42878432 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 198

Conread position: 1-566
Cow position: chr7:1014298-1014860 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 349

Conread position: 1-581
Cow position: chr7:11601078-11600497 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 537, 0

Conread position: 1-600
Cow position: chr7:42879083-42878486 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 583

Conread position: 1-601
Cow position: chr7:8277705-8278303 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 132

Conread position: 1-602
Cow position: chr7:8242908-8243506 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 374
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 104, 116

Conread position: 1-602
Cow position: chr7:42879167-42878568 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 366

Conread position: 1-615
Cow position: chr7:1014466-1015072 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 184

Conread position: 1-616
Cow position: chr7:42878915-42878302 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 193

Conread position: 1-618
Cow position: chr7:1014796-1015411 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 583

Conread position: 1-618
Cow position: chr7:3180142-3180757 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 570

Conread position: 1-619
Cow position: chr7:1014712-1015328 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 540, 568

Conread position: 1-619
Cow position: chr7:3179974-3180590 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 520, 527

Conread position: 1-624
Cow position: chr7:1014880-1015503 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 542, 559

Conread position: 1-632
Cow position: chr7:8325430-8326063 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 15

Conread position: 3-518
Cow position: chr7:3179892-3180407 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-551
Cow position: chr7:3180312-3180860 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 507, 485

Conread position: 5-308
Cow position: chr7:11434542-11434239 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 192
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 6-539
Cow position: chr7:11601157-11600624 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-540
Cow position: chr7:1014387-1014915 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 271

Conread position: 29-474
Cow position: chr7:42878719-42878274 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 250

Conread position: 30-436
Cow position: chr7:8243692-8244095 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 269
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 73, 91

Conread position: 30-436
Cow position: chr7:8278321-8278719 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 253
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 123

Conread position: 30-474
Cow position: chr7:11600881-11600437 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 387

Conread position: 30-519
Cow position: chr7:8243021-8243509 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 320
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 91, 102

Conread position: 30-574
Cow position: chr7:18390048-18390592 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 391

Conread position: 30-618
Cow position: chr7:3180087-3180673 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 514, 530

Conread position: 31-371
Cow position: chr7:1439946-1440285 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 228
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 159, 25

Conread position: 31-512
Cow position: chr7:8243274-8243754 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 314
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 155, 107

Conread position: 31-512
Cow position: chr7:8243609-8244087 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 306
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 332, 345

Conread position: 31-519
Cow position: chr7:8277651-8278139 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 176

Conread position: 38-512
Cow position: chr7:1439786-1440258 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 38-517
Cow position: chr7:1438227-1438707 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 304
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 62, 80

Conread position: 39-600
Cow position: chr7:3179844-3180403 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 500, 529

Conread position: 44-519
Cow position: chr7:8243454-8243929 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 309
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 92

Conread position: 44-523
Cow position: chr7:11434748-11434276 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 306
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 81, 65

Conread position: 47-539
Cow position: chr7:11601283-11600792 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 70

Conread position: 47-551
Cow position: chr7:1439457-1439963 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 47

Conread position: 47-565
Cow position: chr7:1014674-1015195 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 77

Conread position: 47-565
Cow position: chr7:11601200-11600679 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 297

Conread position: 47-612
Cow position: chr7:18390233-18390796 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 138

Conread position: 47-618
Cow position: chr7:18390149-18390718 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 56

Conread position: 50-434
Cow position: chr7:1439881-1440264 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 51-512
Cow position: chr7:8278091-8278550 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 289
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 150, 157

Conread position: 56-519
Cow position: chr7:8277256-8277719 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 300
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 65, 51

Conread position: 57-362
Cow position: chr7:1438414-1438719 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 201
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 59, 46

Conread position: 62-517
Cow position: chr7:8324735-8325191 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 45

Conread position: 63-540
Cow position: chr7:3179700-3180177 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 38

Conread position: 67-582
Cow position: chr7:42879437-42878921 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 327
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 42, 57

Conread position: 69-551
Cow position: chr7:1438092-1438573 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 290
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 223, 109

Conread position: 69-602
Cow position: chr7:11434807-11434283 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 339
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 140, 128

Conread position: 70-618
Cow position: chr7:1014283-1014823 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 375

Conread position: 75-512
Cow position: chr7:42879261-42878824 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 124

Conread position: 75-521
Cow position: chr7:8242814-8243260 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 279
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 296, 302

Conread position: 110-602
Cow position: chr7:42879314-42878820 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 186

Conread position: 118-541
Cow position: chr7:1014079-1014502 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 254
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 130-578
Cow position: chr7:1014673-1015121 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 438

Conread position: 131-511
Cow position: chr7:1014260-1014640 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 305

Conread position: 140-519
Cow position: chr7:8324729-8325108 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 46

Conread position: 145-615
Cow position: chr7:18389995-18390463 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 306
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 53

Conread position: 156-602
Cow position: chr7:3179709-3180153 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 364

Conread position: 179-512
Cow position: chr7:1014224-1014557 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 191-618
Cow position: chr7:3179660-3180085 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 46

Conread position: 206-519
Cow position: chr7:1439448-1439765 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 229, 146

Conread position: 224-574
Cow position: chr7:8277256-8277606 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 218
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 53

Conread position: 233-512
Cow position: chr7:8242804-8243083 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 177
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 645-1122
Cow position: chr7:1015847-1016310 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 301
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 45

Show alignments to all cow chromosomes.