Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053I23.5 |
| Conread position: | 1-304 |
| Cow position: | chr8:55581435-55581738 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-317 |
| Cow position: | chr8:48406597-48406281 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 269, 282 |
| Conread position: | 1-347 |
| Cow position: | chr8:45201631-45201977 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-473 |
| Cow position: | chr8:6958055-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 293 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 276, 284 |
| Conread position: | 1-477 |
| Cow position: | chr8:46816910-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 1-486 |
| Cow position: | chr8:45201715-45202191 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 472, 286 |
| Conread position: | 1-498 |
| Cow position: | chr8:46816826-46817323 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-517 |
| Cow position: | chr8:48407269-48406752 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 366 |
| Conread position: | 1-519 |
| Cow position: | chr8:46815986-46816504 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 348 |
| Conread position: | 1-520 |
| Cow position: | chr8:55581183-55581702 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-522 |
| Cow position: | chr8:46816406-46816927 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-535 |
| Cow position: | chr8:45200959-45201493 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 1-535 |
| Cow position: | chr8:55581015-55581549 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-537 |
| Cow position: | chr8:45201043-45201579 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-537 |
| Cow position: | chr8:45201379-45201915 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 420 |
| Conread position: | 1-549 |
| Cow position: | chr8:48407521-48406972 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 540, 0 |
| Conread position: | 1-551 |
| Cow position: | chr8:45201127-45201678 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 0 |
| Conread position: | 1-551 |
| Cow position: | chr8:46816154-46816705 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 0 |
| Conread position: | 1-551 |
| Cow position: | chr8:48406849-48406298 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 103 |
| Conread position: | 1-551 |
| Cow position: | chr8:48407101-48406550 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 198 |
| Conread position: | 1-565 |
| Cow position: | chr8:46816490-46817057 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 513, 522 |
| Conread position: | 1-565 |
| Cow position: | chr8:48406933-48406366 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 1-566 |
| Cow position: | chr8:46816070-46816638 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 543, 0 |
| Conread position: | 1-578 |
| Cow position: | chr8:46815899-46816479 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 545 |
| Conread position: | 1-578 |
| Cow position: | chr8:46816574-46817151 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 531 |
| Conread position: | 1-578 |
| Cow position: | chr8:46816742-46817319 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 219 |
| Conread position: | 1-602 |
| Cow position: | chr8:46816322-46816921 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 214 |
| Conread position: | 1-602 |
| Cow position: | chr8:46816658-46817257 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 447 |
| Conread position: | 1-602 |
| Cow position: | chr8:55580847-55581446 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 519 |
| Conread position: | 1-616 |
| Cow position: | chr8:45201295-45201908 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 504 |
| Conread position: | 1-632 |
| Cow position: | chr8:45201211-45201844 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 34 |
| Conread position: | 3-602 |
| Cow position: | chr8:48407435-48406838 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 521, 532 |
| Conread position: | 11-517 |
| Cow position: | chr8:55581109-55581616 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 0 |
| Conread position: | 21-414 |
| Cow position: | chr8:55581369-55581765 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 24-512 |
| Cow position: | chr8:45201486-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-602 |
| Cow position: | chr8:46816261-46816836 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 514, 536 |
| Conread position: | 30-551 |
| Cow position: | chr8:48407324-48406802 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 242 |
| Conread position: | 38-537 |
| Cow position: | chr8:48407568-48407069 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 245 |
| Conread position: | 38-565 |
| Cow position: | chr8:45201584-45202106 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 405 |
| Conread position: | 60-494 |
| Cow position: | chr8:48406706-48406272 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 210 |
| Conread position: | 60-617 |
| Cow position: | chr8:48407630-48407075 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 71-565 |
| Cow position: | chr8:55580833-55581330 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 169 |
| Conread position: | 75-578 |
| Cow position: | chr8:45200949-45201452 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 75-602 |
| Cow position: | chr8:55580753-55581278 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 217 |
| Conread position: | 80-616 |
| Cow position: | chr8:45200786-45201320 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 341 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 198, 190 |
| Conread position: | 81-506 |
| Cow position: | chr8:6958059-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 276 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 265, 288 |
| Conread position: | 93-613 |
| Cow position: | chr8:45200883-45201402 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 131 |
| Conread position: | 110-574 |
| Cow position: | chr8:48407666-48407200 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 313 |
| Conread position: | 311-612 |
| Cow position: | chr8:55580736-55581036 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 332-539 |
| Cow position: | chr8:6958060-6957853 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.