Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053J21.3 |
| Conread position: | 2-180 |
| Cow position: | chr14:26933089-26933265 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-189 |
| Cow position: | chr14:19271893-19272078 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 2-250 |
| Cow position: | chr14:39322462-39322208 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 152, 46 |
| Conread position: | 2-250 |
| Cow position: | chr14:40990084-40989840 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 2-266 |
| Cow position: | chr14:43262043-43261779 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 192, 63 |
| Conread position: | 2-267 |
| Cow position: | chr14:1734591-1734857 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 2-267 |
| Cow position: | chr14:37797867-37798137 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 181, 46 |
| Conread position: | 2-267 |
| Cow position: | chr14:39627422-39627150 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 2-267 |
| Cow position: | chr14:43289645-43289919 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 2-269 |
| Cow position: | chr14:13990050-13990320 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 2-269 |
| Cow position: | chr14:19595388-19595121 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 188, 48 |
| Conread position: | 3-266 |
| Cow position: | chr14:33516187-33515919 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 3-267 |
| Cow position: | chr14:35062433-35062699 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 45 |
| Conread position: | 5-263 |
| Cow position: | chr14:19459213-19459473 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 5-267 |
| Cow position: | chr14:24894018-24894274 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 194, 43 |
| Conread position: | 5-270 |
| Cow position: | chr14:44264098-44264366 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 5-279 |
| Cow position: | chr14:24519939-24519664 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 8-267 |
| Cow position: | chr14:10906978-10907242 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 11-267 |
| Cow position: | chr14:5646063-5645810 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 11-267 |
| Cow position: | chr14:18694080-18694333 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 11-267 |
| Cow position: | chr14:34345612-34345864 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 11-267 |
| Cow position: | chr14:40461839-40462088 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 194, 37 |
| Conread position: | 11-274 |
| Cow position: | chr14:10711181-10710922 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 11-307 |
| Cow position: | chr14:21346489-21346781 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 12-267 |
| Cow position: | chr14:16342175-16341926 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 12-267 |
| Cow position: | chr14:17755823-17756074 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 12-267 |
| Cow position: | chr14:20600646-20600903 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 171, 36 |
| Conread position: | 12-267 |
| Cow position: | chr14:24417148-24417402 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 12-267 |
| Cow position: | chr14:28378629-28378878 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 12-267 |
| Cow position: | chr14:28987957-28988207 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 12-267 |
| Cow position: | chr14:39774790-39774539 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 13-267 |
| Cow position: | chr14:19887797-19887540 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 13-267 |
| Cow position: | chr14:27848466-27848716 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 13-267 |
| Cow position: | chr14:37883653-37883398 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 17-267 |
| Cow position: | chr14:9033402-9033649 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 17-267 |
| Cow position: | chr14:28137828-28138075 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 17-267 |
| Cow position: | chr14:30433143-30432896 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 17-267 |
| Cow position: | chr14:31683283-31683530 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 17-267 |
| Cow position: | chr14:47954353-47954106 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 26-267 |
| Cow position: | chr14:39003469-39003715 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 26-270 |
| Cow position: | chr14:40880371-40880127 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 162, 32 |
| Conread position: | 31-267 |
| Cow position: | chr14:41978919-41979153 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 169, 29 |
| Conread position: | 34-263 |
| Cow position: | chr14:26128551-26128774 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr14:14082055-14082282 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr14:19551112-19550885 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 183, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:22103017-22103244 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr14:32500911-32500684 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:33289244-33289017 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:34626411-34626184 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:39327576-39327349 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:44368302-44368075 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 184, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:46220631-46220858 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 175, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:47485990-47486217 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:48571725-48571952 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 183, 27 |
| Conread position: | 34-267 |
| Cow position: | chr14:49063868-49063641 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-275 |
| Cow position: | chr14:30798274-30798038 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 171, 26 |
| Conread position: | 36-267 |
| Cow position: | chr14:12520040-12519815 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 180, 25 |
| Conread position: | 81-266 |
| Cow position: | chr14:8985260-8985076 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-266 |
| Cow position: | chr14:38295960-38295776 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 83 |
| Conread position: | 81-267 |
| Cow position: | chr14:12272311-12272496 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-267 |
| Cow position: | chr14:20273830-20273637 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 81-267 |
| Cow position: | chr14:24799153-24798968 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-267 |
| Cow position: | chr14:28257251-28257060 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 81-267 |
| Cow position: | chr14:28350126-28350311 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-267 |
| Cow position: | chr14:38047763-38047578 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 134, 92 |
| Conread position: | 81-269 |
| Cow position: | chr14:8873084-8873278 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 82-289 |
| Cow position: | chr14:33834427-33834633 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 72 |
| Conread position: | 83-266 |
| Cow position: | chr14:19879588-19879400 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 92 |
| Conread position: | 87-270 |
| Cow position: | chr14:23465527-23465344 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 117 |
| Conread position: | 91-265 |
| Cow position: | chr14:41096029-41096207 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 101-269 |
| Cow position: | chr14:31373168-31372993 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 169 |
Show alignments to all cow chromosomes.