Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053J21.3 |
| Conread position: | 2-201 |
| Cow position: | chr18:41168542-41168349 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 187, 25 |
| Conread position: | 2-263 |
| Cow position: | chr18:30853082-30853337 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 186, 46 |
| Conread position: | 2-265 |
| Cow position: | chr18:18056523-18056783 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 2-267 |
| Cow position: | chr18:260438-260697 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 186, 32 |
| Conread position: | 2-267 |
| Cow position: | chr18:7964987-7964725 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 203, 45 |
| Conread position: | 2-267 |
| Cow position: | chr18:14049240-14048970 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 2-267 |
| Cow position: | chr18:23681795-23682064 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 2-269 |
| Cow position: | chr18:42851443-42851706 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 186, 46 |
| Conread position: | 2-270 |
| Cow position: | chr18:20043797-20043529 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 3-270 |
| Cow position: | chr18:37861672-37861951 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 4-267 |
| Cow position: | chr18:24711917-24712181 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 5-260 |
| Cow position: | chr18:14762329-14762079 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 5-268 |
| Cow position: | chr18:32908652-32908390 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 59 |
| Conread position: | 6-258 |
| Cow position: | chr18:52803605-52803355 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 7-266 |
| Cow position: | chr18:28530350-28530613 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 7-267 |
| Cow position: | chr18:17757148-17757411 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 8-266 |
| Cow position: | chr18:2387688-2387426 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 8-267 |
| Cow position: | chr18:19159215-19159467 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 8-267 |
| Cow position: | chr18:20226392-20226654 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 8-273 |
| Cow position: | chr18:51017333-51017602 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 11-267 |
| Cow position: | chr18:31202122-31201870 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 6 |
| Conread position: | 11-267 |
| Cow position: | chr18:42629458-42629205 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 194, 37 |
| Conread position: | 12-267 |
| Cow position: | chr18:7649740-7649487 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 12-267 |
| Cow position: | chr18:12585395-12585645 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 12-267 |
| Cow position: | chr18:32860393-32860137 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 12-267 |
| Cow position: | chr18:33606378-33606125 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 12-267 |
| Cow position: | chr18:39709636-39709384 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 12-269 |
| Cow position: | chr18:4556639-4556894 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 13-267 |
| Cow position: | chr18:42966583-42966332 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 14-267 |
| Cow position: | chr18:23630833-23631084 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 187, 34 |
| Conread position: | 16-267 |
| Cow position: | chr18:42361116-42361368 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 17-250 |
| Cow position: | chr18:24547780-24548011 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 17-267 |
| Cow position: | chr18:22591384-22591631 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 17-267 |
| Cow position: | chr18:27554813-27555060 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 17-267 |
| Cow position: | chr18:27995767-27995520 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 17-267 |
| Cow position: | chr18:30216307-30216056 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 17-267 |
| Cow position: | chr18:40059764-40059517 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 17-267 |
| Cow position: | chr18:51579697-51579944 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 18-255 |
| Cow position: | chr18:33371906-33372144 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 167, 42 |
| Conread position: | 18-267 |
| Cow position: | chr18:14121823-14121570 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 31-267 |
| Cow position: | chr18:23687825-23688055 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 32-267 |
| Cow position: | chr18:16462585-16462814 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 173, 29 |
| Conread position: | 34-267 |
| Cow position: | chr18:5185323-5185550 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr18:10292796-10292569 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr18:11251314-11251541 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr18:21738446-21738219 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr18:26485463-26485236 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr18:26568648-26568421 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 182, 31 |
| Conread position: | 34-267 |
| Cow position: | chr18:27798084-27798311 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr18:28086883-28086656 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr18:33616354-33616581 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr18:37314658-37314885 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr18:40252933-40253160 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr18:42421684-42421911 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr18:55436066-55436293 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-299 |
| Cow position: | chr18:43539185-43538926 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 182, 27 |
| Conread position: | 60-267 |
| Cow position: | chr18:43144670-43144882 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 176 |
| Conread position: | 80-241 |
| Cow position: | chr18:33056941-33056775 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 81-264 |
| Cow position: | chr18:48601605-48601425 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 81-265 |
| Cow position: | chr18:11383867-11383682 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 123 |
| Conread position: | 81-265 |
| Cow position: | chr18:19990886-19990697 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 81-267 |
| Cow position: | chr18:1954845-1955030 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 118, 92 |
| Conread position: | 81-267 |
| Cow position: | chr18:19462306-19462121 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 134, 92 |
| Conread position: | 81-267 |
| Cow position: | chr18:21609134-21609323 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 77 |
| Conread position: | 81-267 |
| Cow position: | chr18:48392514-48392324 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 82-270 |
| Cow position: | chr18:28189148-28189338 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 106, 90 |
| Conread position: | 83-265 |
| Cow position: | chr18:4315976-4315801 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 132, 90 |
| Conread position: | 83-267 |
| Cow position: | chr18:602442-602625 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 122, 90 |
| Conread position: | 83-267 |
| Cow position: | chr18:17698945-17699136 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 83-267 |
| Cow position: | chr18:22275365-22275548 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 90 |
| Conread position: | 91-267 |
| Cow position: | chr18:18248131-18247946 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 102-266 |
| Cow position: | chr18:33756551-33756386 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 102 |
Show alignments to all cow chromosomes.