Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053J21.3 |
| Conread position: | 2-189 |
| Cow position: | chr24:18846774-18846583 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-235 |
| Cow position: | chr24:26555594-26555360 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 2-266 |
| Cow position: | chr24:23486751-23486495 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 190, 46 |
| Conread position: | 2-266 |
| Cow position: | chr24:41411531-41411266 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 49 |
| Conread position: | 2-286 |
| Cow position: | chr24:5616209-5615929 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 3-267 |
| Cow position: | chr24:16996678-16996411 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 3-269 |
| Cow position: | chr24:17029818-17030078 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 3-270 |
| Cow position: | chr24:24455489-24455223 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 4-266 |
| Cow position: | chr24:38444622-38444362 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 44 |
| Conread position: | 5-261 |
| Cow position: | chr24:6160323-6160576 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 7-189 |
| Cow position: | chr24:25894596-25894416 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 7-271 |
| Cow position: | chr24:36220195-36219926 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 8-267 |
| Cow position: | chr24:9070677-9070930 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 207, 40 |
| Conread position: | 9-267 |
| Cow position: | chr24:30263084-30262825 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 11-267 |
| Cow position: | chr24:19837253-19837001 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 11-267 |
| Cow position: | chr24:19886312-19886060 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 12-267 |
| Cow position: | chr24:7001314-7001566 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 12-267 |
| Cow position: | chr24:18025218-18025462 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 187, 15 |
| Conread position: | 12-267 |
| Cow position: | chr24:24250486-24250226 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 176 |
| Conread position: | 12-267 |
| Cow position: | chr24:36555075-36555326 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 167, 10 |
| Conread position: | 13-267 |
| Cow position: | chr24:27844767-27845018 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 13-267 |
| Cow position: | chr24:31309174-31308929 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 192, 35 |
| Conread position: | 14-263 |
| Cow position: | chr24:6141202-6141450 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 14-263 |
| Cow position: | chr24:36722483-36722236 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 201, 34 |
| Conread position: | 17-267 |
| Cow position: | chr24:10034964-10035211 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 17-267 |
| Cow position: | chr24:12518893-12518646 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 17-267 |
| Cow position: | chr24:12696044-12696291 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 200, 31 |
| Conread position: | 17-267 |
| Cow position: | chr24:15084659-15084412 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 18-267 |
| Cow position: | chr24:35822849-35823095 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 197, 30 |
| Conread position: | 23-269 |
| Cow position: | chr24:19321498-19321744 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 31-267 |
| Cow position: | chr24:18234837-18234607 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 174, 35 |
| Conread position: | 34-267 |
| Cow position: | chr24:599633-599860 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:4649218-4649445 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr24:4667140-4666913 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:6018911-6019138 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 171, 26 |
| Conread position: | 34-267 |
| Cow position: | chr24:6436521-6436295 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:8754575-8754348 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:8777035-8776808 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:9365741-9365968 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:12377057-12377284 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr24:13319395-13319622 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr24:17456107-17455880 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:18740309-18740536 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:20368621-20368399 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:26795476-26795249 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:27153593-27153820 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:27760581-27760354 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr24:28494803-28494576 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 175, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:28832802-28833029 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr24:29097413-29097640 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 44-267 |
| Cow position: | chr24:41487914-41487686 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 81-267 |
| Cow position: | chr24:15372810-15372621 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 81-267 |
| Cow position: | chr24:28067453-28067262 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 81-267 |
| Cow position: | chr24:40056028-40056217 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 92 |
| Conread position: | 81-286 |
| Cow position: | chr24:6343045-6342840 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 39 |
| Conread position: | 82-251 |
| Cow position: | chr24:23153163-23152989 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 82-269 |
| Cow position: | chr24:30768404-30768217 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 133, 88 |
| Conread position: | 107-267 |
| Cow position: | chr24:37574380-37574544 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.