Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053J21.3 |
| Conread position: | 1-251 |
| Cow position: | chr25:21303420-21303172 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 2-253 |
| Cow position: | chr25:16967302-16967551 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 2-266 |
| Cow position: | chr25:35047839-35047579 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 2-267 |
| Cow position: | chr25:28700067-28700323 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 186, 38 |
| Conread position: | 2-285 |
| Cow position: | chr25:18082252-18082532 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 189, 42 |
| Conread position: | 2-308 |
| Cow position: | chr25:30412149-30412460 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 101 |
| Conread position: | 3-222 |
| Cow position: | chr25:9943657-9943876 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 4-267 |
| Cow position: | chr25:16033501-16033235 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 187, 44 |
| Conread position: | 6-267 |
| Cow position: | chr25:15465808-15465545 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 7-267 |
| Cow position: | chr25:38001585-38001325 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 8-250 |
| Cow position: | chr25:35585740-35585984 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 8-267 |
| Cow position: | chr25:21041600-21041345 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 208, 40 |
| Conread position: | 8-267 |
| Cow position: | chr25:29336271-29336010 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 11-267 |
| Cow position: | chr25:8482536-8482789 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 11-267 |
| Cow position: | chr25:17994515-17994768 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 11-267 |
| Cow position: | chr25:29525085-29525338 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 11-288 |
| Cow position: | chr25:9045308-9045033 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 31, 61 |
| Conread position: | 12-266 |
| Cow position: | chr25:17658390-17658140 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 12-278 |
| Cow position: | chr25:14959926-14960194 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 13-266 |
| Cow position: | chr25:24227561-24227820 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 13-267 |
| Cow position: | chr25:22314976-22314725 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 13-267 |
| Cow position: | chr25:26757214-26756956 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 162 |
| Conread position: | 17-267 |
| Cow position: | chr25:5168-4921 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 17-267 |
| Cow position: | chr25:17993747-17993993 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 17-267 |
| Cow position: | chr25:27146208-27145961 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 17-267 |
| Cow position: | chr25:35554454-35554198 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 18-267 |
| Cow position: | chr25:33901606-33901853 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 34-230 |
| Cow position: | chr25:13067231-13067421 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 181, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:4401631-4401858 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:10158498-10158271 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:14555424-14555197 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 171, 26 |
| Conread position: | 34-267 |
| Cow position: | chr25:15412777-15412550 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:15428923-15429150 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:17553512-17553740 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:22198338-22198111 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:23601187-23601414 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:25873236-25873463 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr25:35589826-35589599 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 181, 31 |
| Conread position: | 34-267 |
| Cow position: | chr25:35649589-35649362 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 67-249 |
| Cow position: | chr25:9937802-9937990 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 80-267 |
| Cow position: | chr25:5154768-5154960 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 81-250 |
| Cow position: | chr25:6891818-6891989 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 92 |
| Conread position: | 81-250 |
| Cow position: | chr25:16738232-16738400 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-251 |
| Cow position: | chr25:35337651-35337478 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 125 |
| Conread position: | 81-267 |
| Cow position: | chr25:395066-394876 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 81-267 |
| Cow position: | chr25:4337245-4337054 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 81-267 |
| Cow position: | chr25:8120486-8120301 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 134, 97 |
| Conread position: | 81-267 |
| Cow position: | chr25:8935511-8935326 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-267 |
| Cow position: | chr25:11437093-11437278 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 134, 92 |
| Conread position: | 81-267 |
| Cow position: | chr25:15452810-15452995 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-267 |
| Cow position: | chr25:28263060-28262869 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 151 |
| Conread position: | 81-269 |
| Cow position: | chr25:30666039-30666233 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 81-270 |
| Cow position: | chr25:13941023-13941216 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 94 |
| Conread position: | 83-267 |
| Cow position: | chr25:17562776-17562594 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 87-267 |
| Cow position: | chr25:22709256-22709073 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 87-270 |
| Cow position: | chr25:3895801-3895616 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 90-266 |
| Cow position: | chr25:16951608-16951785 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 90-267 |
| Cow position: | chr25:31438919-31439094 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 91-267 |
| Cow position: | chr25:29802040-29802215 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 82 |
| Conread position: | 98-270 |
| Cow position: | chr25:19366999-19367174 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 101, 75 |
Show alignments to all cow chromosomes.