Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053J21.3 |
| Conread position: | 2-218 |
| Cow position: | chr28:32588036-32587817 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 2-259 |
| Cow position: | chr28:26466476-26466219 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 2-266 |
| Cow position: | chr28:5108861-5109128 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 2-267 |
| Cow position: | chr28:21630976-21630717 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 2-267 |
| Cow position: | chr28:34632544-34632263 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 188 |
| Conread position: | 2-275 |
| Cow position: | chr28:2099494-2099776 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 2-293 |
| Cow position: | chr28:10867704-10867408 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 3-251 |
| Cow position: | chr28:19854910-19854659 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 6-265 |
| Cow position: | chr28:1288037-1288297 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 154, 42 |
| Conread position: | 7-253 |
| Cow position: | chr28:13179177-13178936 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 7-266 |
| Cow position: | chr28:20772513-20772254 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 8-266 |
| Cow position: | chr28:13693538-13693270 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 8-267 |
| Cow position: | chr28:18139664-18139928 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 11-267 |
| Cow position: | chr28:786697-786444 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 11-267 |
| Cow position: | chr28:1575465-1575718 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 11-267 |
| Cow position: | chr28:10192995-10193248 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 193, 37 |
| Conread position: | 12-267 |
| Cow position: | chr28:7372467-7372719 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 12-267 |
| Cow position: | chr28:21844739-21844489 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 12-267 |
| Cow position: | chr28:34082238-34082483 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 187, 22 |
| Conread position: | 13-292 |
| Cow position: | chr28:11585425-11585701 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 203, 35 |
| Conread position: | 17-267 |
| Cow position: | chr28:22577234-22576987 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 17-267 |
| Cow position: | chr28:22582815-22582568 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 188, 31 |
| Conread position: | 18-267 |
| Cow position: | chr28:18516111-18516358 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 29-252 |
| Cow position: | chr28:31971980-31972208 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 34-267 |
| Cow position: | chr28:3881936-3882163 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:5311336-5311563 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr28:6319149-6319376 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 181, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:9182882-9182656 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:9710140-9710367 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 182, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:10871103-10870876 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:12701881-12701654 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:15107566-15107793 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 182, 31 |
| Conread position: | 34-267 |
| Cow position: | chr28:16182362-16182135 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 183, 31 |
| Conread position: | 34-267 |
| Cow position: | chr28:17687647-17687874 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:19186237-19186010 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 182, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:24993501-24993274 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 34-267 |
| Cow position: | chr28:25829409-25829182 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:29683251-29683024 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 34-267 |
| Cow position: | chr28:34656100-34655871 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 171, 30 |
| Conread position: | 80-268 |
| Cow position: | chr28:9265054-9264866 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 80-270 |
| Cow position: | chr28:22645223-22645029 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 81-266 |
| Cow position: | chr28:8855871-8855681 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 81-266 |
| Cow position: | chr28:9220001-9219819 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 136, 79 |
| Conread position: | 81-267 |
| Cow position: | chr28:1957335-1957150 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 134, 92 |
| Conread position: | 81-267 |
| Cow position: | chr28:4185804-4185614 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 147 |
| Conread position: | 81-267 |
| Cow position: | chr28:11047293-11047108 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 92 |
| Conread position: | 81-267 |
| Cow position: | chr28:11752428-11752615 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 109, 80 |
| Conread position: | 81-267 |
| Cow position: | chr28:14742517-14742330 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-267 |
| Cow position: | chr28:19961606-19961415 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 81-267 |
| Cow position: | chr28:24592482-24592297 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 92 |
| Conread position: | 81-267 |
| Cow position: | chr28:25314898-25314706 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 81-267 |
| Cow position: | chr28:25556246-25556431 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-267 |
| Cow position: | chr28:32589671-32589486 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 124, 92 |
| Conread position: | 81-296 |
| Cow position: | chr28:409263-409481 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 82-249 |
| Cow position: | chr28:4031522-4031351 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 108, 146 |
| Conread position: | 82-266 |
| Cow position: | chr28:1550816-1550630 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 89, 93 |
| Conread position: | 82-267 |
| Cow position: | chr28:10280799-10280615 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 115, 91 |
| Conread position: | 82-276 |
| Cow position: | chr28:22488651-22488455 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 7 |
| Conread position: | 83-266 |
| Cow position: | chr28:19570082-19570272 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 83-275 |
| Cow position: | chr28:24674435-24674246 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 132, 82 |
| Conread position: | 103-282 |
| Cow position: | chr28:22133394-22133213 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 88, 46 |
Show alignments to all cow chromosomes.