Cow genome map

Conread name: Ss1.1-Pig4-TMW8053K24.3.5

Conread position: 3-229
Cow position: chr14:3127471-3127247 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 149
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 202, 0

Conread position: 3-286
Cow position: chr14:447972-448255 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 101

Conread position: 3-289
Cow position: chr14:3079959-3079673 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 3-289
Cow position: chr14:3156197-3156483 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 92, 82

Conread position: 3-300
Cow position: chr14:3155540-3155837 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 191
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 168, 172

Conread position: 3-326
Cow position: chr14:680942-681265 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 101, 88

Conread position: 3-344
Cow position: chr14:25877458-25877799 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 219
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 12, 19

Conread position: 3-351
Cow position: chr14:447720-448068 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-359
Cow position: chr14:25895665-25896021 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 223
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 102

Conread position: 3-373
Cow position: chr14:25896001-25896371 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 233
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 91

Conread position: 3-402
Cow position: chr14:680270-680672 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 249
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 81, 94

Conread position: 3-406
Cow position: chr14:3156029-3156435 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 257
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 357, 365

Conread position: 3-407
Cow position: chr14:680774-681181 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 178

Conread position: 3-407
Cow position: chr14:3128143-3127736 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 254
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 103, 99

Conread position: 3-410
Cow position: chr14:3061526-3061116 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 256
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 80, 94

Conread position: 3-410
Cow position: chr14:3080379-3079969 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 218

Conread position: 3-411
Cow position: chr14:25860407-25860813 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 257
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 12, 19

Conread position: 3-427
Cow position: chr14:3080127-3079703 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 365

Conread position: 3-427
Cow position: chr14:3080715-3080284 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 174

Conread position: 3-427
Cow position: chr14:3080799-3080375 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 279
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 187, 181

Conread position: 3-428
Cow position: chr14:3101038-3100617 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 268
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 372, 29

Conread position: 4-406
Cow position: chr14:25784148-25784553 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 254
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 371, 0

Conread position: 5-407
Cow position: chr14:25795217-25794813 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 250
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 177, 170

Conread position: 5-452
Cow position: chr14:25795133-25794682 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 286
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 98, 88

Conread position: 6-325
Cow position: chr14:25836097-25836416 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 200
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 100, 86

Conread position: 6-334
Cow position: chr14:25794796-25794468 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 203
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 78

Conread position: 6-337
Cow position: chr14:25836433-25836764 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 206
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 100, 86

Conread position: 6-362
Cow position: chr14:3127804-3127447 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 319

Conread position: 6-373
Cow position: chr14:25859234-25859601 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 229
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 94

Conread position: 6-406
Cow position: chr14:3127888-3127485 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 0

Conread position: 6-406
Cow position: chr14:25783730-25784133 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 252
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 354, 362

Conread position: 6-406
Cow position: chr14:25895584-25895987 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 250
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 339, 354

Conread position: 6-407
Cow position: chr14:680861-681265 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 260
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 354, 0

Conread position: 6-410
Cow position: chr14:25783562-25783969 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 247
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 354, 358

Conread position: 6-427
Cow position: chr14:3080460-3080039 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 408

Conread position: 6-427
Cow position: chr14:3155948-3156369 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 271
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 369, 408

Conread position: 7-371
Cow position: chr14:3127635-3127271 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 361

Conread position: 7-407
Cow position: chr14:3127971-3127568 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 0

Conread position: 8-376
Cow position: chr14:3080039-3079670 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 244
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 5, 361

Conread position: 8-410
Cow position: chr14:3100869-3100464 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 244
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 352, 0

Conread position: 8-434
Cow position: chr14:25876708-25877132 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 272
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 98, 13

Conread position: 10-344
Cow position: chr14:3061435-3061101 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 212
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 97, 89

Conread position: 10-373
Cow position: chr14:3156120-3156483 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 358

Conread position: 10-406
Cow position: chr14:25784070-25784469 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 257
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 350, 0

Conread position: 10-407
Cow position: chr14:25783650-25784049 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 241
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 350, 397

Conread position: 11-336
Cow position: chr14:3100698-3100373 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 202
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 158, 170

Conread position: 11-406
Cow position: chr14:25876623-25877024 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 253
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 21, 76

Conread position: 12-343
Cow position: chr14:3155465-3155796 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 12-394
Cow position: chr14:25783484-25783869 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 244
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 348, 356

Conread position: 12-407
Cow position: chr14:3101363-3100969 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 98, 26

Conread position: 12-410
Cow position: chr14:25783820-25784221 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 251
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 360, 0

Conread position: 12-415
Cow position: chr14:3100781-3100375 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 254
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 251, 240

Conread position: 13-349
Cow position: chr14:3080873-3080537 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 223
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 110, 99

Conread position: 13-359
Cow position: chr14:433951-434297 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 219
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 90, 79

Conread position: 16-317
Cow position: chr14:420621-420918 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 192
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 13

Conread position: 16-333
Cow position: chr14:25784328-25784645 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 194
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 16-410
Cow position: chr14:25783992-25784389 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 245
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 344, 0

Conread position: 18-334
Cow position: chr14:3061259-3060943 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 201
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 196, 189

Conread position: 19-343
Cow position: chr14:25859583-25859907 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 242, 254

Conread position: 21-333
Cow position: chr14:25860173-25860485 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 205
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 70

Conread position: 21-334
Cow position: chr14:447822-448135 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 79, 71

Conread position: 21-343
Cow position: chr14:25859753-25860075 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 56, 68

Conread position: 21-344
Cow position: chr14:25836868-25837191 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 156, 169

Conread position: 21-373
Cow position: chr14:3080277-3079925 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 21-380
Cow position: chr14:25860089-25860448 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 224
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 327, 336

Conread position: 21-406
Cow position: chr14:25877140-25877528 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 245
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 327, 336

Conread position: 21-407
Cow position: chr14:25836196-25836585 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 246
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 92, 71

Conread position: 21-407
Cow position: chr14:25836784-25837173 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 238
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 240, 252

Conread position: 21-407
Cow position: chr14:25876468-25876857 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 245
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 98, 80

Conread position: 21-410
Cow position: chr14:3080529-3080137 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 329

Conread position: 21-420
Cow position: chr14:433875-434277 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 249
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 80, 71

Conread position: 21-427
Cow position: chr14:447570-447976 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 163

Conread position: 21-428
Cow position: chr14:25895851-25896258 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 257
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 241, 236

Conread position: 30-337
Cow position: chr14:25860266-25860573 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 202
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 46, 52

Conread position: 30-337
Cow position: chr14:25877317-25877624 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 147, 159

Conread position: 30-343
Cow position: chr14:25859174-25859487 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 201
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 273, 280

Conread position: 30-402
Cow position: chr14:25836709-25837084 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 234
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 318, 331

Conread position: 30-404
Cow position: chr14:25794520-25794144 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 236
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 187, 359

Conread position: 33-336
Cow position: chr14:25836628-25836931 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 190
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 234, 240

Conread position: 33-402
Cow position: chr14:25859513-25859885 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 233
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 312, 324

Conread position: 37-359
Cow position: chr14:3061744-3061422 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 207
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 40, 51

Conread position: 39-337
Cow position: chr14:3155408-3155706 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 39-346
Cow position: chr14:25836550-25836857 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 45-406
Cow position: chr14:3081009-3080645 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 225
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 84, 93

Conread position: 46-343
Cow position: chr14:447511-447808 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 55, 46

Conread position: 48-406
Cow position: chr14:25783352-25783713 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 231
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 312, 320

Conread position: 63-371
Cow position: chr14:420584-420890 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 202
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 23

Conread position: 100-406
Cow position: chr14:25783321-25783629 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 196
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 260, 5

Conread position: 105-406
Cow position: chr14:25836112-25836416 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 196
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 85

Conread position: 121-362
Cow position: chr14:3155406-3155648 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 239, 0

Show alignments to all cow chromosomes.