Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053K24.3.5 |
| Conread position: | 1-367 |
| Cow position: | chr17:22551883-22551516 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 359, 0 |
| Conread position: | 1-406 |
| Cow position: | chr17:22552722-22552315 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 359, 6 |
| Conread position: | 2-295 |
| Cow position: | chr17:22451999-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 165, 179 |
| Conread position: | 2-332 |
| Cow position: | chr17:22473632-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 292, 0 |
| Conread position: | 2-373 |
| Cow position: | chr17:22473548-22473919 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 83 |
| Conread position: | 3-319 |
| Cow position: | chr17:22551797-22551481 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 80 |
| Conread position: | 3-347 |
| Cow position: | chr17:22452082-22451737 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 342, 0 |
| Conread position: | 3-363 |
| Cow position: | chr17:41440572-41440211 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 207, 214 |
| Conread position: | 3-410 |
| Cow position: | chr17:22452250-22451840 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 267, 271 |
| Conread position: | 3-410 |
| Cow position: | chr17:22552469-22552059 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 187, 182 |
| Conread position: | 3-410 |
| Cow position: | chr17:22590055-22589645 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 334, 370 |
| Conread position: | 5-406 |
| Cow position: | chr17:22473299-22473703 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 101, 87 |
| Conread position: | 6-312 |
| Cow position: | chr17:22498841-22498535 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 84 |
| Conread position: | 6-407 |
| Cow position: | chr17:22590136-22589732 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 6-410 |
| Cow position: | chr17:22499093-22498686 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 348, 322 |
| Conread position: | 6-440 |
| Cow position: | chr17:22499261-22498824 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 354, 358 |
| Conread position: | 10-331 |
| Cow position: | chr17:22589544-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-408 |
| Cow position: | chr17:22452411-22452011 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 350, 359 |
| Conread position: | 10-410 |
| Cow position: | chr17:22552378-22551975 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 264 |
| Conread position: | 10-410 |
| Cow position: | chr17:22589796-22589393 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 11-407 |
| Cow position: | chr17:22499172-22498773 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 349, 357 |
| Conread position: | 11-410 |
| Cow position: | chr17:22552209-22551807 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 12-331 |
| Cow position: | chr17:22452157-22451838 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 166, 178 |
| Conread position: | 12-410 |
| Cow position: | chr17:22499003-22498602 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 111, 125 |
| Conread position: | 12-410 |
| Cow position: | chr17:22552544-22552143 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 172, 177 |
| Conread position: | 12-410 |
| Cow position: | chr17:22552796-22552395 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 177, 165 |
| Conread position: | 12-410 |
| Cow position: | chr17:22590214-22589813 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 89, 94 |
| Conread position: | 12-415 |
| Cow position: | chr17:22589626-22589220 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 249, 262 |
| Conread position: | 12-419 |
| Cow position: | chr17:22589962-22589552 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 12-423 |
| Cow position: | chr17:22552124-22551710 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 99, 80 |
| Conread position: | 12-423 |
| Cow position: | chr17:22553048-22552634 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 173, 178 |
| Conread position: | 18-373 |
| Cow position: | chr17:41440893-41440538 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 20-407 |
| Cow position: | chr17:22499331-22498942 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 340, 387 |
| Conread position: | 20-407 |
| Cow position: | chr17:22552620-22552230 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 250, 254 |
| Conread position: | 21-407 |
| Cow position: | chr17:22552283-22551894 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 21-407 |
| Cow position: | chr17:22589701-22589312 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 74, 64 |
| Conread position: | 21-410 |
| Cow position: | chr17:22552871-22552479 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 169, 164 |
| Conread position: | 21-410 |
| Cow position: | chr17:22589869-22589477 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 341, 0 |
| Conread position: | 21-428 |
| Cow position: | chr17:22452316-22451909 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 386 |
| Conread position: | 32-410 |
| Cow position: | chr17:22473410-22473791 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 330, 305 |
| Conread position: | 32-429 |
| Cow position: | chr17:22473494-22473891 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 39-405 |
| Cow position: | chr17:22553105-22552736 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 150, 138 |
| Conread position: | 41-406 |
| Cow position: | chr17:22499394-22499026 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 319, 327 |
| Conread position: | 48-390 |
| Cow position: | chr17:22498883-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 127, 119 |
| Conread position: | 52-490 |
| Cow position: | chr17:22473262-22473698 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 322, 355 |
| Conread position: | 56-410 |
| Cow position: | chr17:22590254-22589897 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 103-410 |
| Cow position: | chr17:22590291-22589981 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 257, 265 |
Show alignments to all cow chromosomes.