Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053K24.3.5 |
| Conread position: | 1-250 |
| Cow position: | chr19:14960011-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 91 |
| Conread position: | 2-317 |
| Cow position: | chr19:14959606-14959292 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 298, 0 |
| Conread position: | 2-373 |
| Cow position: | chr19:43570009-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 358, 276 |
| Conread position: | 2-402 |
| Cow position: | chr19:14960344-14959943 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 3-303 |
| Cow position: | chr19:14948335-14948035 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 3-335 |
| Cow position: | chr19:14960093-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 186, 174 |
| Conread position: | 3-373 |
| Cow position: | chr19:14959194-14958830 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 294, 83 |
| Conread position: | 3-406 |
| Cow position: | chr19:14940372-14940778 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 271, 264 |
| Conread position: | 3-409 |
| Cow position: | chr19:14940204-14940613 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 0 |
| Conread position: | 3-410 |
| Cow position: | chr19:14960175-14959769 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 235, 27 |
| Conread position: | 3-425 |
| Cow position: | chr19:23650022-23650444 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 357, 365 |
| Conread position: | 3-427 |
| Cow position: | chr19:14940540-14940964 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 89 |
| Conread position: | 4-292 |
| Cow position: | chr19:23650191-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-408 |
| Cow position: | chr19:23649519-23649925 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 86 |
| Conread position: | 5-405 |
| Cow position: | chr19:23613986-23614389 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 95, 78 |
| Conread position: | 5-408 |
| Cow position: | chr19:23613482-23613887 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 6-407 |
| Cow position: | chr19:23649941-23650345 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 98, 84 |
| Conread position: | 6-410 |
| Cow position: | chr19:20677918-20678325 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 101, 90 |
| Conread position: | 9-358 |
| Cow position: | chr19:14940715-14941063 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 10-287 |
| Cow position: | chr19:14940799-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 179, 175 |
| Conread position: | 10-334 |
| Cow position: | chr19:23614495-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-358 |
| Cow position: | chr19:23650113-23650461 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-373 |
| Cow position: | chr19:23649609-23649972 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 336, 340 |
| Conread position: | 10-406 |
| Cow position: | chr19:23649861-23650260 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 10-407 |
| Cow position: | chr19:23649777-23650177 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 10-410 |
| Cow position: | chr19:14939960-14940362 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 11-406 |
| Cow position: | chr19:14940296-14940694 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 0 |
| Conread position: | 11-406 |
| Cow position: | chr19:23613656-23614054 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 255, 234 |
| Conread position: | 11-407 |
| Cow position: | chr19:23649442-23649841 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 11-410 |
| Cow position: | chr19:14940464-14940866 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 11-410 |
| Cow position: | chr19:20678091-20678493 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 81, 95 |
| Conread position: | 11-410 |
| Cow position: | chr19:20678259-20678661 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 351, 326 |
| Conread position: | 11-410 |
| Cow position: | chr19:23649358-23649760 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 91, 95 |
| Conread position: | 12-198 |
| Cow position: | chr19:23614917-23615103 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 12-331 |
| Cow position: | chr19:14959678-14959361 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 12-367 |
| Cow position: | chr19:23597254-23597610 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 348, 0 |
| Conread position: | 12-406 |
| Cow position: | chr19:23614245-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 12-407 |
| Cow position: | chr19:23649695-23650093 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 345, 361 |
| Conread position: | 12-410 |
| Cow position: | chr19:14940045-14940446 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 12-410 |
| Cow position: | chr19:23596921-23597319 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 92, 76 |
| Conread position: | 12-410 |
| Cow position: | chr19:23613405-23613806 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 163, 142 |
| Conread position: | 15-407 |
| Cow position: | chr19:43570164-43569769 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 345, 353 |
| Conread position: | 18-301 |
| Cow position: | chr19:23597428-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 256, 251 |
| Conread position: | 18-415 |
| Cow position: | chr19:43570077-43569682 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 19-361 |
| Cow position: | chr19:23597345-23597690 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 19-370 |
| Cow position: | chr19:23614756-23615110 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 103, 66 |
| Conread position: | 19-406 |
| Cow position: | chr19:14960411-14960023 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 19-408 |
| Cow position: | chr19:23614420-23614811 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 19-430 |
| Cow position: | chr19:20677763-20678178 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 257, 228 |
| Conread position: | 20-407 |
| Cow position: | chr19:23613749-23614139 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 86 |
| Conread position: | 20-407 |
| Cow position: | chr19:23613833-23614222 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 21-407 |
| Cow position: | chr19:14940138-14940527 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 339, 347 |
| Conread position: | 21-407 |
| Cow position: | chr19:23613918-23614307 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 314, 362 |
| Conread position: | 21-410 |
| Cow position: | chr19:23613582-23613974 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 21-452 |
| Cow position: | chr19:23597095-23597530 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 26-445 |
| Cow position: | chr19:20677602-20678026 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 335, 347 |
| Conread position: | 27-406 |
| Cow position: | chr19:20635562-20635179 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 363 |
| Conread position: | 30-410 |
| Cow position: | chr19:14940651-14941034 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 338 |
| Conread position: | 32-310 |
| Cow position: | chr19:20635304-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 32-470 |
| Cow position: | chr19:20635472-20635035 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 32-480 |
| Cow position: | chr19:20635640-20635189 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 242, 209 |
| Conread position: | 48-407 |
| Cow position: | chr19:23613357-23613719 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 312, 320 |
| Conread position: | 48-410 |
| Cow position: | chr19:23596873-23597235 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 52-344 |
| Cow position: | chr19:14948453-14948162 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 52-410 |
| Cow position: | chr19:14915974-14916333 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 119 |
| Conread position: | 57-410 |
| Cow position: | chr19:23597047-23597403 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 62-400 |
| Cow position: | chr19:14959712-14959373 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 66-411 |
| Cow position: | chr19:43570278-43569934 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 294, 17 |
| Conread position: | 109-410 |
| Cow position: | chr19:20635647-20635343 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 236, 245 |
| Conread position: | 113-440 |
| Cow position: | chr19:23649292-23649618 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 247, 299 |
| Conread position: | 125-425 |
| Cow position: | chr19:23613350-23613650 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 225, 196 |
Show alignments to all cow chromosomes.