Cow genome map

Conread name: Ss1.1-Pig4-TMW8053K24.3.5

Conread position: 1-300
Cow position: chr22:12475589-12475290 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1-300
Cow position: chr22:12499670-12499969 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 1-402
Cow position: chr22:12499166-12499570 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 72, 81

Conread position: 1-406
Cow position: chr22:46654309-46654717 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 262
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 114, 83

Conread position: 1-407
Cow position: chr22:12432452-12432043 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 251
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 177, 187

Conread position: 1-409
Cow position: chr22:11640818-11641229 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 268
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 188, 177

Conread position: 1-409
Cow position: chr22:12458564-12458153 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 265
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 359, 367

Conread position: 1-410
Cow position: chr22:46654141-46654553 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 256
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 105, 83

Conread position: 2-376
Cow position: chr22:11641071-11641445 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 251
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 187, 175

Conread position: 3-336
Cow position: chr22:12499084-12499417 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-402
Cow position: chr22:12418981-12418579 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 254
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 348, 380

Conread position: 3-406
Cow position: chr22:12458226-12457820 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 79

Conread position: 3-407
Cow position: chr22:12476343-12475936 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 265
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 357, 361

Conread position: 3-407
Cow position: chr22:12498916-12499323 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 361

Conread position: 3-408
Cow position: chr22:12432282-12431875 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 260
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 95, 81

Conread position: 3-408
Cow position: chr22:12458478-12458071 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 365

Conread position: 3-410
Cow position: chr22:12476175-12475765 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 268
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 357, 361

Conread position: 3-428
Cow position: chr22:12458310-12457885 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 269
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 332, 341

Conread position: 4-406
Cow position: chr22:46654228-46654633 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 251
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 67, 84

Conread position: 5-363
Cow position: chr22:12418811-12418450 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 240
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 172, 176

Conread position: 5-402
Cow position: chr22:12476257-12475857 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 247
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 78

Conread position: 5-402
Cow position: chr22:12499002-12499402 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 257
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 70, 78

Conread position: 5-407
Cow position: chr22:12399628-12399223 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 363

Conread position: 5-408
Cow position: chr22:12431356-12430951 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 259
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 369, 401

Conread position: 6-358
Cow position: chr22:12385535-12385181 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 75

Conread position: 6-406
Cow position: chr22:11640907-11641310 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 258
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 354, 0

Conread position: 6-407
Cow position: chr22:12399459-12399056 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 78

Conread position: 6-407
Cow position: chr22:12431103-12430699 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 260
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 329, 360

Conread position: 6-407
Cow position: chr22:12458391-12457987 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 266
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 95, 78

Conread position: 7-373
Cow position: chr22:12418893-12418527 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 224
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 353, 362

Conread position: 9-407
Cow position: chr22:12431016-12430615 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 260
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 351, 359

Conread position: 9-407
Cow position: chr22:12431520-12431119 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 258
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 74, 112

Conread position: 9-407
Cow position: chr22:12475917-12475517 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 75

Conread position: 9-407
Cow position: chr22:12499342-12499742 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 86, 75

Conread position: 9-410
Cow position: chr22:12399372-12398968 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 0

Conread position: 10-402
Cow position: chr22:12431687-12431292 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 248
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 74, 84

Conread position: 10-407
Cow position: chr22:12399539-12399139 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 171

Conread position: 10-410
Cow position: chr22:12432107-12431704 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 253
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 73, 84

Conread position: 11-296
Cow position: chr22:12385192-12384907 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 188
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 160, 168

Conread position: 11-297
Cow position: chr22:12458050-12457762 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 86, 72

Conread position: 11-343
Cow position: chr22:12385276-12384944 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 90, 80

Conread position: 11-372
Cow position: chr22:12399118-12398757 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 355

Conread position: 11-407
Cow position: chr22:12431602-12431203 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 250
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 65, 72

Conread position: 11-407
Cow position: chr22:12432022-12431623 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 255
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 202, 211

Conread position: 11-408
Cow position: chr22:12431182-12430783 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 268
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 81

Conread position: 11-408
Cow position: chr22:12475999-12475600 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 259
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 349, 356

Conread position: 11-409
Cow position: chr22:12399790-12399389 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 357

Conread position: 11-410
Cow position: chr22:12385360-12384958 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 248
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 363, 0

Conread position: 11-410
Cow position: chr22:12431854-12431452 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 248
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 86, 72

Conread position: 11-417
Cow position: chr22:12399286-12398877 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 71

Conread position: 12-207
Cow position: chr22:12398949-12398754 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 78

Conread position: 12-331
Cow position: chr22:12431769-12431450 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 86, 71

Conread position: 12-373
Cow position: chr22:12475662-12475301 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 71

Conread position: 12-377
Cow position: chr22:12499597-12499962 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 357

Conread position: 12-407
Cow position: chr22:12475830-12475432 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 357

Conread position: 12-410
Cow position: chr22:12399705-12399304 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 331

Conread position: 12-410
Cow position: chr22:12499429-12499830 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 348, 0

Conread position: 12-417
Cow position: chr22:12385445-12385035 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 76

Conread position: 14-410
Cow position: chr22:12385695-12385294 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 259
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 157, 161

Conread position: 18-299
Cow position: chr22:11701414-11701695 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 155, 165

Conread position: 18-331
Cow position: chr22:11701330-11701643 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 83, 73

Conread position: 20-331
Cow position: chr22:11666594-11666905 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 84, 76

Conread position: 20-373
Cow position: chr22:46654076-46654429 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 220
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 68

Conread position: 20-407
Cow position: chr22:14430297-14430687 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 245
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 86

Conread position: 20-421
Cow position: chr22:14429961-14430362 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 256
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 72

Conread position: 21-365
Cow position: chr22:12458124-12457779 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 146

Conread position: 21-400
Cow position: chr22:11640754-11641136 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 245
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 339, 0

Conread position: 21-406
Cow position: chr22:12431424-12431036 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 252
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 85, 71

Conread position: 26-410
Cow position: chr22:14429715-14430102 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 242
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 52, 71

Conread position: 29-410
Cow position: chr22:14429802-14430186 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 238
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 36

Conread position: 30-410
Cow position: chr22:11641015-11641398 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 248
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 71, 56

Conread position: 30-410
Cow position: chr22:14468132-14468515 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 235
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 313, 305

Conread position: 30-428
Cow position: chr22:12475728-12475330 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 259
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 67, 54

Conread position: 32-410
Cow position: chr22:14429889-14430270 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 245
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 74, 60

Conread position: 33-331
Cow position: chr22:14430142-14430440 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 56

Conread position: 39-380
Cow position: chr22:12432162-12431822 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 221
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 62, 44

Conread position: 39-409
Cow position: chr22:12432330-12431957 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 241
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 59, 44

Conread position: 44-407
Cow position: chr22:12432493-12432127 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 221
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 283, 339

Conread position: 44-410
Cow position: chr22:12458605-12458236 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 244
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 68, 43

Conread position: 45-402
Cow position: chr22:12399840-12399480 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 241
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 315, 323

Conread position: 50-406
Cow position: chr22:11640615-11640974 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 234
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 37

Conread position: 51-402
Cow position: chr22:12476379-12476025 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 235
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 50, 33

Conread position: 51-402
Cow position: chr22:12498880-12499234 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 230
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 309, 0

Conread position: 66-410
Cow position: chr22:14468000-14468347 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 223
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 111, 116

Conread position: 112-410
Cow position: chr22:12458621-12458320 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 248, 256

Conread position: 135-454
Cow position: chr22:12419017-12418694 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 225, 233

Conread position: 141-408
Cow position: chr22:12498886-12499155 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 234, 266

Conread position: 141-427
Cow position: chr22:12476373-12476087 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 231, 266

Conread position: 173-410
Cow position: chr22:12476425-12476185 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 175, 200

Conread position: 173-410
Cow position: chr22:12498834-12499074 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 175, 200

Conread position: 193-407
Cow position: chr22:12458624-12458407 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 76

Show alignments to all cow chromosomes.