Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053K24.3.5 |
| Conread position: | 1-302 |
| Cow position: | chr23:24535749-24535448 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-326 |
| Cow position: | chr23:25626743-25627070 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 1-407 |
| Cow position: | chr23:24639261-24639669 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 121, 6 |
| Conread position: | 2-380 |
| Cow position: | chr23:25698611-25698233 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 3-234 |
| Cow position: | chr23:24639850-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 209, 223 |
| Conread position: | 3-289 |
| Cow position: | chr23:25660449-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 3-310 |
| Cow position: | chr23:24546948-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-337 |
| Cow position: | chr23:25660197-25660531 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 3-360 |
| Cow position: | chr23:25724081-25723726 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 341, 0 |
| Conread position: | 3-367 |
| Cow position: | chr23:24654079-24654445 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 325, 0 |
| Conread position: | 3-373 |
| Cow position: | chr23:24639682-24640052 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 357, 365 |
| Conread position: | 3-397 |
| Cow position: | chr23:24626354-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 357, 365 |
| Conread position: | 3-402 |
| Cow position: | chr23:24522606-24522204 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 101 |
| Conread position: | 3-409 |
| Cow position: | chr23:24560844-24560435 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 357, 0 |
| Conread position: | 3-427 |
| Cow position: | chr23:24639346-24639770 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 3-440 |
| Cow position: | chr23:24560508-24560068 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 4-360 |
| Cow position: | chr23:24522521-24522165 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 92, 79 |
| Conread position: | 4-406 |
| Cow position: | chr23:25626413-25626815 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 268 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 8-421 |
| Cow position: | chr23:24547196-24546782 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 9-485 |
| Cow position: | chr23:24626276-24626753 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 10-407 |
| Cow position: | chr23:24547109-24546709 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 11-301 |
| Cow position: | chr23:24639774-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-302 |
| Cow position: | chr23:25698350-25698060 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 11-337 |
| Cow position: | chr23:24522763-24522440 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 191, 153 |
| Conread position: | 11-343 |
| Cow position: | chr23:24535823-24535491 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 11-352 |
| Cow position: | chr23:25660373-25660714 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 11-377 |
| Cow position: | chr23:25626585-25626951 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 11-406 |
| Cow position: | chr23:24547276-24546878 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 73, 78 |
| Conread position: | 11-407 |
| Cow position: | chr23:24560668-24560269 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 11-407 |
| Cow position: | chr23:24639522-24639921 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 334, 357 |
| Conread position: | 11-407 |
| Cow position: | chr23:25660289-25660688 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 166, 170 |
| Conread position: | 11-408 |
| Cow position: | chr23:24639606-24640005 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 396 |
| Conread position: | 11-410 |
| Cow position: | chr23:24560584-24560182 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 12-344 |
| Cow position: | chr23:25626169-25626501 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-380 |
| Cow position: | chr23:25626670-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 348, 0 |
| Conread position: | 12-408 |
| Cow position: | chr23:25626253-25626648 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 83, 79 |
| Conread position: | 16-407 |
| Cow position: | chr23:24639443-24639836 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 16-409 |
| Cow position: | chr23:24535986-24535590 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 344, 0 |
| Conread position: | 19-408 |
| Cow position: | chr23:25626008-25626400 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 319, 346 |
| Conread position: | 19-408 |
| Cow position: | chr23:25626092-25626483 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 359, 388 |
| Conread position: | 19-428 |
| Cow position: | chr23:25698510-25698101 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 21-287 |
| Cow position: | chr23:25723979-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-405 |
| Cow position: | chr23:24560742-24560355 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 80, 66 |
| Conread position: | 39-410 |
| Cow position: | chr23:25660149-25660523 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 44-407 |
| Cow position: | chr23:24639219-24639585 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 48-330 |
| Cow position: | chr23:24521971-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 200, 243 |
| Conread position: | 51-331 |
| Cow position: | chr23:24535867-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 51-384 |
| Cow position: | chr23:24654043-24654378 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 293, 322 |
| Conread position: | 51-406 |
| Cow position: | chr23:24547320-24546962 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 53-410 |
| Cow position: | chr23:25625958-25626318 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 292, 302 |
| Conread position: | 57-410 |
| Cow position: | chr23:25724111-25723755 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 62-410 |
| Cow position: | chr23:25698635-25698284 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 96-405 |
| Cow position: | chr23:24535990-24535678 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 264, 0 |
| Conread position: | 104-407 |
| Cow position: | chr23:24560911-24560605 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 174, 180 |
| Conread position: | 119-410 |
| Cow position: | chr23:25660145-25660439 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 136-408 |
| Cow position: | chr23:24536034-24535760 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 169 |
| Conread position: | 139-410 |
| Cow position: | chr23:25698642-25698368 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 212-407 |
| Cow position: | chr23:24654036-24654234 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 163, 0 |
Show alignments to all cow chromosomes.