Cow genome map

Conread name: Ss1.1-Pig4-TMW8053K24.3.5

Conread position: 1-337
Cow position: chr25:18642212-18641873 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 216
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 82

Conread position: 1-407
Cow position: chr25:34770165-34769756 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 0

Conread position: 1-410
Cow position: chr25:33298522-33298934 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 359, 388

Conread position: 1-410
Cow position: chr25:36800675-36801086 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 273
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 124, 6

Conread position: 1-410
Cow position: chr25:36800843-36801254 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 10

Conread position: 1-423
Cow position: chr25:33298607-33299031 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 181, 6

Conread position: 1-427
Cow position: chr25:34769829-34769403 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 367

Conread position: 2-410
Cow position: chr25:33298776-33299186 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 9

Conread position: 2-427
Cow position: chr25:33157429-33157004 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 412

Conread position: 3-286
Cow position: chr25:366770-367053 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 62

Conread position: 3-309
Cow position: chr25:33127931-33128237 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 202
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 174, 178

Conread position: 3-331
Cow position: chr25:25652989-25653317 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 201
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-359
Cow position: chr25:25652401-25652757 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 223
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 3-364
Cow position: chr25:33145059-33145421 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 357, 0

Conread position: 3-366
Cow position: chr25:34763042-34763403 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 219
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 357, 77

Conread position: 3-371
Cow position: chr25:346493-346861 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 225
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 209, 219

Conread position: 3-372
Cow position: chr25:34763375-34763741 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 220
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 3-377
Cow position: chr25:34762958-34763329 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 225
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 357, 161

Conread position: 3-402
Cow position: chr25:33157344-33156942 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 0

Conread position: 3-406
Cow position: chr25:34447151-34447557 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 266
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 357, 365

Conread position: 3-408
Cow position: chr25:33127679-33128086 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 15

Conread position: 3-408
Cow position: chr25:33157176-33156769 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 365

Conread position: 3-410
Cow position: chr25:33144894-33145301 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 268
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 128, 118

Conread position: 3-410
Cow position: chr25:34447235-34447645 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 249

Conread position: 5-408
Cow position: chr25:33299366-33299772 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 266
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 88, 78

Conread position: 6-246
Cow position: chr25:34432984-34433224 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 65, 80

Conread position: 6-250
Cow position: chr25:34714250-34714494 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 117, 133

Conread position: 6-323
Cow position: chr25:34763126-34763443 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 192
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 6-331
Cow position: chr25:33299031-33299356 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 214
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 71, 91

Conread position: 6-359
Cow position: chr25:25652236-25652589 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 224
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 6-371
Cow position: chr25:34447574-34447928 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 234
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 206, 132

Conread position: 6-377
Cow position: chr25:33127850-33128221 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 362

Conread position: 6-380
Cow position: chr25:22235961-22236335 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 233
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 171, 176

Conread position: 7-359
Cow position: chr25:25652489-25652841 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 215
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 183, 177

Conread position: 7-418
Cow position: chr25:33157508-33157094 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 8-295
Cow position: chr25:33145148-33145435 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 189
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 67, 98

Conread position: 8-335
Cow position: chr25:34714167-34714495 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 208
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 5, 129

Conread position: 8-359
Cow position: chr25:25652658-25653009 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 222
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 182, 176

Conread position: 10-298
Cow position: chr25:326975-327263 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 185
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 63, 76

Conread position: 10-343
Cow position: chr25:34447410-34447741 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 74

Conread position: 10-407
Cow position: chr25:33298867-33299266 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 256
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 350, 397

Conread position: 10-407
Cow position: chr25:34446990-34447390 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 265
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 92, 77

Conread position: 10-408
Cow position: chr25:33299287-33299687 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 264
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 96, 90

Conread position: 10-410
Cow position: chr25:23420435-23420838 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 74

Conread position: 11-406
Cow position: chr25:34769987-34769589 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 170

Conread position: 11-407
Cow position: chr25:33299204-33299603 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 251
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 81

Conread position: 11-427
Cow position: chr25:34763299-34763712 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 256
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 81

Conread position: 11-458
Cow position: chr25:34769651-34769200 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 403

Conread position: 12-332
Cow position: chr25:34732554-34732233 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 202
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 60, 85

Conread position: 12-334
Cow position: chr25:34714088-34714410 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 209
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 246, 252

Conread position: 12-353
Cow position: chr25:414804-414469 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 216
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 52

Conread position: 12-406
Cow position: chr25:36800937-36801334 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 257
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 177, 172

Conread position: 12-408
Cow position: chr25:34769902-34769504 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 395

Conread position: 12-410
Cow position: chr25:33157251-33156850 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 0

Conread position: 12-417
Cow position: chr25:33305265-33304862 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 265
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 93, 80

Conread position: 12-425
Cow position: chr25:23420353-23420766 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 83

Conread position: 15-397
Cow position: chr25:34433497-34433879 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 281, 108

Conread position: 15-406
Cow position: chr25:34770067-34769673 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 0

Conread position: 17-340
Cow position: chr25:23420526-23420849 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 17-408
Cow position: chr25:33305425-33305037 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 252
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 84, 22

Conread position: 19-410
Cow position: chr25:34447335-34447727 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 158

Conread position: 20-326
Cow position: chr25:22235891-22236197 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 52, 64

Conread position: 21-353
Cow position: chr25:25652923-25653255 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 212
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 21-419
Cow position: chr25:33305819-33305421 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 245
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 312, 71

Conread position: 22-423
Cow position: chr25:36800611-36801015 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 272
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 23, 7

Conread position: 23-331
Cow position: chr25:33306397-33306098 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 197
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 81, 60

Conread position: 33-347
Cow position: chr25:326486-326802 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 197
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 35-347
Cow position: chr25:34732615-34732303 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 199
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 51

Conread position: 39-406
Cow position: chr25:33144846-33145213 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 237
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 175, 166

Conread position: 39-407
Cow position: chr25:36801372-36801743 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 236
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 67, 53

Conread position: 41-406
Cow position: chr25:36800798-36801166 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 245
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 291, 330

Conread position: 44-359
Cow position: chr25:366727-367042 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 206
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 16, 20

Conread position: 48-287
Cow position: chr25:427335-427574 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 35

Conread position: 48-408
Cow position: chr25:22235835-22236198 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 44, 36

Conread position: 48-408
Cow position: chr25:36801549-36801912 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 58, 44

Conread position: 49-408
Cow position: chr25:34713873-34714234 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 229
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 40

Conread position: 54-410
Cow position: chr25:23420311-23420670 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 126, 120

Conread position: 57-427
Cow position: chr25:34446953-34447323 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 249
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 41, 33

Conread position: 69-379
Cow position: chr25:326951-327260 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 202
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 37, 26

Conread position: 103-433
Cow position: chr25:33157580-33157243 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 60

Conread position: 123-415
Cow position: chr25:36800546-36800839 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 196
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 90, 11

Conread position: 125-408
Cow position: chr25:346447-346733 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 250, 0

Conread position: 131-408
Cow position: chr25:366730-367009 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 180
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 244, 276

Conread position: 132-371
Cow position: chr25:427335-427574 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 132-410
Cow position: chr25:33298485-33298766 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 207, 239

Conread position: 133-330
Cow position: chr25:34433027-34433224 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 147-410
Cow position: chr25:33305943-33305683 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 174
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 186, 125

Show alignments to all cow chromosomes.