Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053K24.3.5 |
| Conread position: | 1-337 |
| Cow position: | chr28:9290296-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-408 |
| Cow position: | chr28:11334094-11333684 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 105 |
| Conread position: | 2-406 |
| Cow position: | chr28:11333841-11333440 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 358, 367 |
| Conread position: | 2-407 |
| Cow position: | chr28:7757377-7757784 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 3-371 |
| Cow position: | chr28:33210273-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 5-408 |
| Cow position: | chr28:7757799-7758204 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 350, 339 |
| Conread position: | 5-408 |
| Cow position: | chr28:7810395-7810791 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 161, 140 |
| Conread position: | 6-350 |
| Cow position: | chr28:34696212-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 112, 86 |
| Conread position: | 6-376 |
| Cow position: | chr28:9253235-9253605 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 100 |
| Conread position: | 6-409 |
| Cow position: | chr28:7757548-7757954 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 6-415 |
| Cow position: | chr28:9253067-9253479 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 9-371 |
| Cow position: | chr28:9298619-9298978 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 92, 48 |
| Conread position: | 10-311 |
| Cow position: | chr28:7810643-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 161, 165 |
| Conread position: | 10-341 |
| Cow position: | chr28:7758056-7758387 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 93, 82 |
| Conread position: | 10-406 |
| Cow position: | chr28:7757468-7757867 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 10-439 |
| Cow position: | chr28:7757720-7758152 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 96, 74 |
| Conread position: | 11-394 |
| Cow position: | chr28:7810560-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 343, 360 |
| Conread position: | 11-410 |
| Cow position: | chr28:7757637-7758039 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 322, 372 |
| Conread position: | 11-427 |
| Cow position: | chr28:34695968-34696381 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 12-373 |
| Cow position: | chr28:7758462-7758822 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 333, 317 |
| Conread position: | 12-373 |
| Cow position: | chr28:34696053-34696411 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 12-411 |
| Cow position: | chr28:9252904-9253306 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 37, 396 |
| Conread position: | 13-295 |
| Cow position: | chr28:9299276-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 78 |
| Conread position: | 17-408 |
| Cow position: | chr28:9298793-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 18-416 |
| Cow position: | chr28:7757896-7758297 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 306, 355 |
| Conread position: | 19-407 |
| Cow position: | chr28:7810325-7810707 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 339, 216 |
| Conread position: | 20-337 |
| Cow position: | chr28:34673417-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-409 |
| Cow position: | chr28:9290066-9290453 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 332, 142 |
| Conread position: | 21-372 |
| Cow position: | chr28:7757983-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 217, 231 |
| Conread position: | 21-408 |
| Cow position: | chr28:11333906-11333516 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 66 |
| Conread position: | 21-419 |
| Cow position: | chr28:9290151-9290546 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 144, 58 |
| Conread position: | 21-440 |
| Cow position: | chr28:34696143-34696561 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 33-288 |
| Cow position: | chr28:34696323-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 59 |
| Conread position: | 33-373 |
| Cow position: | chr28:11334146-11333806 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 39-366 |
| Cow position: | chr28:9299218-9299548 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 44-312 |
| Cow position: | chr28:34673357-34673625 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-407 |
| Cow position: | chr28:7758413-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 48-373 |
| Cow position: | chr28:33210234-33210559 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 312, 321 |
| Conread position: | 54-344 |
| Cow position: | chr28:34695840-34696130 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 149, 131 |
| Conread position: | 61-409 |
| Cow position: | chr28:7757351-7757702 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 151, 161 |
| Conread position: | 61-415 |
| Cow position: | chr28:9253038-9253395 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 62-406 |
| Cow position: | chr28:7810284-7810622 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 272, 251 |
| Conread position: | 117-410 |
| Cow position: | chr28:9298643-9298936 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 243, 22 |
| Conread position: | 130-338 |
| Cow position: | chr28:34673360-34673567 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 6 |
Show alignments to all cow chromosomes.