Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053K24.3.5 |
| Conread position: | 1-247 |
| Cow position: | chr7:3180580-3180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 86 |
| Conread position: | 1-259 |
| Cow position: | chr7:1015234-1015494 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 105 |
| Conread position: | 1-372 |
| Cow position: | chr7:1015066-1015437 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 137, 141 |
| Conread position: | 1-407 |
| Cow position: | chr7:3179824-3180232 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 89 |
| Conread position: | 1-407 |
| Cow position: | chr7:3180328-3180737 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 2-407 |
| Cow position: | chr7:42878895-42878488 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 358, 11 |
| Conread position: | 2-418 |
| Cow position: | chr7:42879147-42878729 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 9 |
| Conread position: | 3-331 |
| Cow position: | chr7:11600806-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-347 |
| Cow position: | chr7:18390459-18390803 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-407 |
| Cow position: | chr7:3179994-3180401 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 0 |
| Conread position: | 3-408 |
| Cow position: | chr7:11600890-11600483 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 357, 404 |
| Conread position: | 3-410 |
| Cow position: | chr7:3179742-3180152 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 365 |
| Conread position: | 3-418 |
| Cow position: | chr7:11601058-11600640 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 169, 156 |
| Conread position: | 3-427 |
| Cow position: | chr7:18390291-18390715 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 5-257 |
| Cow position: | chr7:1440021-1440273 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 95, 87 |
| Conread position: | 6-407 |
| Cow position: | chr7:42878808-42878405 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 6-410 |
| Cow position: | chr7:11601139-11600732 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 253, 232 |
| Conread position: | 10-407 |
| Cow position: | chr7:1439522-1439923 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 66 |
| Conread position: | 10-410 |
| Cow position: | chr7:1439859-1440261 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 88, 73 |
| Conread position: | 11-410 |
| Cow position: | chr7:3180254-3180656 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 334, 339 |
| Conread position: | 11-415 |
| Cow position: | chr7:42878971-42878564 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 11-429 |
| Cow position: | chr7:18390215-18390633 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 12-298 |
| Cow position: | chr7:42878550-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 12-331 |
| Cow position: | chr7:3180087-3180406 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 12-373 |
| Cow position: | chr7:42878718-42878357 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-405 |
| Cow position: | chr7:1014825-1015221 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 12-410 |
| Cow position: | chr7:3179919-3180320 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 356 |
| Conread position: | 12-427 |
| Cow position: | chr7:1014993-1015408 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 333, 338 |
| Conread position: | 15-402 |
| Cow position: | chr7:42879303-42878913 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 18-407 |
| Cow position: | chr7:18390390-18390782 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 351 |
| Conread position: | 19-260 |
| Cow position: | chr7:1014334-1014575 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 19-331 |
| Cow position: | chr7:8325130-8325442 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 19-417 |
| Cow position: | chr7:11601210-11600809 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 320, 302 |
| Conread position: | 20-332 |
| Cow position: | chr7:1439953-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 20-407 |
| Cow position: | chr7:3180179-3180569 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 337 |
| Conread position: | 20-410 |
| Cow position: | chr7:3180431-3180822 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 340, 367 |
| Conread position: | 20-410 |
| Cow position: | chr7:8277658-8278051 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 163, 170 |
| Conread position: | 20-410 |
| Cow position: | chr7:8277910-8278303 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 20-410 |
| Cow position: | chr7:8325719-8326112 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 254, 241 |
| Conread position: | 21-409 |
| Cow position: | chr7:1014750-1015141 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 24-409 |
| Cow position: | chr7:1439452-1439842 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 68 |
| Conread position: | 30-409 |
| Cow position: | chr7:1014927-1015309 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 343 |
| Conread position: | 44-335 |
| Cow position: | chr7:8324735-8325026 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 45 |
| Conread position: | 44-440 |
| Cow position: | chr7:18389996-18390395 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 52-370 |
| Cow position: | chr7:1014283-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-409 |
| Cow position: | chr7:1438396-1438703 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 112-410 |
| Cow position: | chr7:1014673-1014974 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 233, 243 |
| Conread position: | 134-409 |
| Cow position: | chr7:3179705-3179983 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 202, 239 |
| Conread position: | 192-407 |
| Cow position: | chr7:1014669-1014887 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 12, 28 |
Show alignments to all cow chromosomes.