Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053K24.3.5 |
| Conread position: | 2-337 |
| Cow position: | chr8:55581034-55581369 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 2-406 |
| Cow position: | chr8:46816762-46817168 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 2-444 |
| Cow position: | chr8:48407082-48406637 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 320, 361 |
| Conread position: | 2-452 |
| Cow position: | chr8:46816258-46816711 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 3-373 |
| Cow position: | chr8:46816426-46816796 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 345, 365 |
| Conread position: | 3-403 |
| Cow position: | chr8:48406661-48406258 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 336, 380 |
| Conread position: | 3-430 |
| Cow position: | chr8:48407417-48406990 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 372, 404 |
| Conread position: | 3-438 |
| Cow position: | chr8:55581119-55581553 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 89 |
| Conread position: | 5-406 |
| Cow position: | chr8:46816008-46816412 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 91, 78 |
| Conread position: | 6-409 |
| Cow position: | chr8:45201570-45201976 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 100 |
| Conread position: | 8-333 |
| Cow position: | chr8:46817018-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 85 |
| Conread position: | 8-376 |
| Cow position: | chr8:6958031-6957663 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 210 |
| Conread position: | 9-407 |
| Cow position: | chr8:46816348-46816749 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 359 |
| Conread position: | 10-408 |
| Cow position: | chr8:48407242-48406842 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 11-296 |
| Cow position: | chr8:55581463-55581748 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-407 |
| Cow position: | chr8:46816938-46817337 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 11-408 |
| Cow position: | chr8:48406989-48406589 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 201, 207 |
| Conread position: | 11-408 |
| Cow position: | chr8:48407325-48406925 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 81 |
| Conread position: | 11-409 |
| Cow position: | chr8:55581295-55581696 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 12-405 |
| Cow position: | chr8:55580960-55581356 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 242 |
| Conread position: | 12-406 |
| Cow position: | chr8:48406820-48406423 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 74 |
| Conread position: | 12-409 |
| Cow position: | chr8:45201240-45201640 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 13-408 |
| Cow position: | chr8:48407575-48407177 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 15-406 |
| Cow position: | chr8:46816690-46817084 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 15-406 |
| Cow position: | chr8:48407489-48407095 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 345, 353 |
| Conread position: | 15-407 |
| Cow position: | chr8:46816186-46816581 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 328 |
| Conread position: | 16-333 |
| Cow position: | chr8:46815931-46816252 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 5, 70 |
| Conread position: | 16-377 |
| Cow position: | chr8:48407152-48406791 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 19-407 |
| Cow position: | chr8:45201079-45201470 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 19-410 |
| Cow position: | chr8:55581219-55581613 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 341, 349 |
| Conread position: | 20-407 |
| Cow position: | chr8:45201164-45201554 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 340, 348 |
| Conread position: | 20-408 |
| Cow position: | chr8:46816527-46816917 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 20-409 |
| Cow position: | chr8:45201500-45201892 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 80, 86 |
| Conread position: | 21-407 |
| Cow position: | chr8:45201333-45201722 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 339, 0 |
| Conread position: | 21-407 |
| Cow position: | chr8:46816108-46816497 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 21-410 |
| Cow position: | chr8:46816612-46817004 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 238, 218 |
| Conread position: | 30-410 |
| Cow position: | chr8:55580894-55581277 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 338 |
| Conread position: | 49-408 |
| Cow position: | chr8:48406699-48406337 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 51-406 |
| Cow position: | chr8:46815883-46816244 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 52-407 |
| Cow position: | chr8:48407620-48407262 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 53-380 |
| Cow position: | chr8:55580833-55581160 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 54-407 |
| Cow position: | chr8:45200778-45201134 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 306, 0 |
| Conread position: | 57-408 |
| Cow position: | chr8:45200949-45201302 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 64-405 |
| Cow position: | chr8:55580760-55581104 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 140-407 |
| Cow position: | chr8:45200948-45201218 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 74, 66 |
Show alignments to all cow chromosomes.