Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 1-411 |
| Cow position: | chr12:21252287-21251863 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 2-464 |
| Cow position: | chr12:18467087-18467566 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 5-920 |
| Cow position: | chr12:12755862-12754900 (view UCSC Genome Browser custom track) |
| Alignm length: | 973 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 66 |
| Conread position: | 8-295 |
| Cow position: | chr12:24979985-24980281 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 68 |
| Conread position: | 8-360 |
| Cow position: | chr12:8675774-8675407 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-381 |
| Cow position: | chr12:1407133-1407516 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 74, 160 |
| Conread position: | 8-411 |
| Cow position: | chr12:21210972-21211391 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 8-411 |
| Cow position: | chr12:22571149-22571559 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-411 |
| Cow position: | chr12:33926222-33925803 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-447 |
| Cow position: | chr12:21430260-21430724 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-448 |
| Cow position: | chr12:20460921-20460474 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 59 |
| Conread position: | 8-475 |
| Cow position: | chr12:36212554-36213046 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-612 |
| Cow position: | chr12:24993670-24993050 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 409 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-838 |
| Cow position: | chr12:3363242-3364113 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-882 |
| Cow position: | chr12:11100548-11101466 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 560 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-893 |
| Cow position: | chr12:17717598-17718529 (view UCSC Genome Browser custom track) |
| Alignm length: | 948 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr12:22747516-22748444 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 51 |
| Conread position: | 8-893 |
| Cow position: | chr12:25267036-25266105 (view UCSC Genome Browser custom track) |
| Alignm length: | 952 |
| Alignm identity: | 617 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr12:35548831-35547900 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr12:38892659-38893592 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr12:42605875-42604954 (view UCSC Genome Browser custom track) |
| Alignm length: | 947 |
| Alignm identity: | 595 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 8-921 |
| Cow position: | chr12:34175654-34176622 (view UCSC Genome Browser custom track) |
| Alignm length: | 980 |
| Alignm identity: | 622 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-925 |
| Cow position: | chr12:37561309-37562267 (view UCSC Genome Browser custom track) |
| Alignm length: | 971 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 14-892 |
| Cow position: | chr12:32655862-32656778 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 592 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 108, 54 |
| Conread position: | 15-410 |
| Cow position: | chr12:21944427-21944834 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 15-882 |
| Cow position: | chr12:1887037-1886140 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 562 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 15-946 |
| Cow position: | chr12:30140743-30141701 (view UCSC Genome Browser custom track) |
| Alignm length: | 983 |
| Alignm identity: | 594 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 120, 53 |
| Conread position: | 16-411 |
| Cow position: | chr12:1404577-1404988 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 368 |
| Conread position: | 18-457 |
| Cow position: | chr12:43898303-43897859 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 19-829 |
| Cow position: | chr12:8890733-8889895 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 31-400 |
| Cow position: | chr12:26922234-26922610 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 104, 45 |
| Conread position: | 77-429 |
| Cow position: | chr12:6078738-6078377 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 10, 151 |
| Conread position: | 88-475 |
| Cow position: | chr12:34964920-34964508 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 36, 295 |
| Conread position: | 135-881 |
| Cow position: | chr12:25097834-25097048 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 486 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 144-409 |
| Cow position: | chr12:2805691-2805420 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 158-411 |
| Cow position: | chr12:536829-537092 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 220 |
| Conread position: | 164-744 |
| Cow position: | chr12:36406209-36405592 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 379 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 214 |
| Conread position: | 175-384 |
| Cow position: | chr12:26142395-26142185 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 206-893 |
| Cow position: | chr12:45144559-45145281 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 450 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 27, 170 |
| Conread position: | 230-731 |
| Cow position: | chr12:2807769-2808255 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 297-897 |
| Cow position: | chr12:25144102-25143486 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 395 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 311-893 |
| Cow position: | chr12:25939643-25939056 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 383 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 441-772 |
| Cow position: | chr12:31293095-31292735 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 77 |
Show alignments to all cow chromosomes.