Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 1-360 |
| Cow position: | chr13:34374461-34374098 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 83, 67 |
| Conread position: | 1-374 |
| Cow position: | chr13:2886374-2886004 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 136, 63 |
| Conread position: | 1-385 |
| Cow position: | chr13:20993079-20992698 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 1-766 |
| Cow position: | chr13:3533898-3533112 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 490 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 83, 67 |
| Conread position: | 1-773 |
| Cow position: | chr13:48548240-48549045 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 55 |
| Conread position: | 2-359 |
| Cow position: | chr13:47368252-47368623 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 8-356 |
| Cow position: | chr13:49613444-49613090 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-359 |
| Cow position: | chr13:3692858-3692494 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-410 |
| Cow position: | chr13:15559424-15559842 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-410 |
| Cow position: | chr13:49061444-49061865 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 8-411 |
| Cow position: | chr13:13327032-13327446 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-475 |
| Cow position: | chr13:11737845-11738338 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr13:17310508-17310999 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-545 |
| Cow position: | chr13:1047955-1047412 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 8-732 |
| Cow position: | chr13:5499889-5499162 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 8-782 |
| Cow position: | chr13:15279701-15278907 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 490 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 8-783 |
| Cow position: | chr13:35539254-35540078 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-868 |
| Cow position: | chr13:4855193-4856080 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 544 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 8-881 |
| Cow position: | chr13:32983309-32982392 (view UCSC Genome Browser custom track) |
| Alignm length: | 931 |
| Alignm identity: | 580 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-881 |
| Cow position: | chr13:35759648-35760551 (view UCSC Genome Browser custom track) |
| Alignm length: | 919 |
| Alignm identity: | 570 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-881 |
| Cow position: | chr13:49975767-49976679 (view UCSC Genome Browser custom track) |
| Alignm length: | 922 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-883 |
| Cow position: | chr13:30036190-30035310 (view UCSC Genome Browser custom track) |
| Alignm length: | 916 |
| Alignm identity: | 561 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 8-891 |
| Cow position: | chr13:32548849-32549777 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 582 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 80, 62 |
| Conread position: | 8-893 |
| Cow position: | chr13:562298-561366 (view UCSC Genome Browser custom track) |
| Alignm length: | 943 |
| Alignm identity: | 581 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr13:19565806-19566741 (view UCSC Genome Browser custom track) |
| Alignm length: | 945 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-896 |
| Cow position: | chr13:3555500-3556435 (view UCSC Genome Browser custom track) |
| Alignm length: | 947 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-921 |
| Cow position: | chr13:13901956-13902905 (view UCSC Genome Browser custom track) |
| Alignm length: | 963 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 8-921 |
| Cow position: | chr13:30305286-30306235 (view UCSC Genome Browser custom track) |
| Alignm length: | 964 |
| Alignm identity: | 591 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-921 |
| Cow position: | chr13:32735095-32734138 (view UCSC Genome Browser custom track) |
| Alignm length: | 970 |
| Alignm identity: | 595 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 11-272 |
| Cow position: | chr13:4735370-4735641 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 11-356 |
| Cow position: | chr13:4733626-4733983 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 14-455 |
| Cow position: | chr13:12732887-12732423 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 14-827 |
| Cow position: | chr13:24932697-24931839 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 502 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 15-942 |
| Cow position: | chr13:11350502-11351459 (view UCSC Genome Browser custom track) |
| Alignm length: | 974 |
| Alignm identity: | 598 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 16-400 |
| Cow position: | chr13:33930285-33929905 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 228, 54 |
| Conread position: | 16-475 |
| Cow position: | chr13:17480645-17480168 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 18-544 |
| Cow position: | chr13:27470065-27470601 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 350 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 23-376 |
| Cow position: | chr13:9376969-9376609 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 23-562 |
| Cow position: | chr13:38076187-38075649 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 352 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 25-358 |
| Cow position: | chr13:2872957-2872618 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 25-464 |
| Cow position: | chr13:19449426-19449862 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 25-533 |
| Cow position: | chr13:394009-393504 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 35-411 |
| Cow position: | chr13:51466080-51465691 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 35-893 |
| Cow position: | chr13:32079980-32080896 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 42-475 |
| Cow position: | chr13:19230585-19230131 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 82, 34 |
| Conread position: | 44-941 |
| Cow position: | chr13:47569225-47570146 (view UCSC Genome Browser custom track) |
| Alignm length: | 949 |
| Alignm identity: | 612 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 56-460 |
| Cow position: | chr13:1883347-1882937 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 56-893 |
| Cow position: | chr13:18122734-18121850 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 541 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 62-410 |
| Cow position: | chr13:2581939-2581588 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 88-788 |
| Cow position: | chr13:36671825-36672565 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 476 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 406 |
| Conread position: | 117-506 |
| Cow position: | chr13:12901665-12901273 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 196, 30 |
| Conread position: | 126-881 |
| Cow position: | chr13:36935943-36936740 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 500 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 31, 194 |
| Conread position: | 132-475 |
| Cow position: | chr13:43891454-43891815 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 135-475 |
| Cow position: | chr13:51006804-51006442 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 135-893 |
| Cow position: | chr13:6360090-6360886 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 506 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 150-562 |
| Cow position: | chr13:25929181-25929594 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 107 |
| Conread position: | 159-881 |
| Cow position: | chr13:9300417-9301179 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 474 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 159-941 |
| Cow position: | chr13:46461915-46462701 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 535 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 175-881 |
| Cow position: | chr13:16806858-16807606 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 470 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 33, 354 |
| Conread position: | 179-464 |
| Cow position: | chr13:47024062-47024367 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 199 |
| Conread position: | 181-893 |
| Cow position: | chr13:13333687-13332934 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 464 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 346 |
| Conread position: | 191-843 |
| Cow position: | chr13:21854624-21855306 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 443 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 223-384 |
| Cow position: | chr13:12272300-12272460 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 230-583 |
| Cow position: | chr13:14856983-14856635 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 255-942 |
| Cow position: | chr13:6078674-6077977 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 456 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 311-893 |
| Cow position: | chr13:21837894-21837277 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 387 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 75, 219 |
| Conread position: | 327-946 |
| Cow position: | chr13:487961-488597 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 402 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 60, 125 |
| Conread position: | 400-945 |
| Cow position: | chr13:21587052-21587620 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 365 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 67 |
| Conread position: | 487-843 |
| Cow position: | chr13:22020166-22019792 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 489-871 |
| Cow position: | chr13:54243703-54243322 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 592-926 |
| Cow position: | chr13:20906800-20907145 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 29, 193 |
| Conread position: | 595-921 |
| Cow position: | chr13:43975234-43974902 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 282 |
| Conread position: | 597-871 |
| Cow position: | chr13:20992398-20992120 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 194, 24 |
| Conread position: | 618-805 |
| Cow position: | chr13:57217241-57217425 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 618-947 |
| Cow position: | chr13:41362353-41362682 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 142, 20 |
| Conread position: | 619-776 |
| Cow position: | chr13:58843456-58843613 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 623-868 |
| Cow position: | chr13:14183206-14182956 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 701-945 |
| Cow position: | chr13:55594475-55594227 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 101 |
Show alignments to all cow chromosomes.