Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 2-881 |
| Cow position: | chr14:46123085-46123988 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 558 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 84, 66 |
| Conread position: | 4-828 |
| Cow position: | chr14:46375275-46376130 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 522 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 98 |
| Conread position: | 8-294 |
| Cow position: | chr14:192016-192312 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-294 |
| Cow position: | chr14:15273589-15273292 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 8-320 |
| Cow position: | chr14:31684721-31684396 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-395 |
| Cow position: | chr14:30713820-30713417 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-400 |
| Cow position: | chr14:11835594-11836003 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-410 |
| Cow position: | chr14:11475326-11474918 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-410 |
| Cow position: | chr14:30130452-30130860 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-464 |
| Cow position: | chr14:46222044-46222526 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-574 |
| Cow position: | chr14:9894798-9895378 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 368 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 125, 60 |
| Conread position: | 8-774 |
| Cow position: | chr14:37256124-37256920 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 503 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-830 |
| Cow position: | chr14:5531301-5532160 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 8-842 |
| Cow position: | chr14:1660419-1661284 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 8-842 |
| Cow position: | chr14:22104594-22103719 (view UCSC Genome Browser custom track) |
| Alignm length: | 887 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-881 |
| Cow position: | chr14:17489364-17488460 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-881 |
| Cow position: | chr14:32585062-32584146 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 565 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 116, 80 |
| Conread position: | 8-893 |
| Cow position: | chr14:9450568-9449642 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr14:19549161-19550085 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr14:23255378-23254448 (view UCSC Genome Browser custom track) |
| Alignm length: | 950 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr14:29045713-29044783 (view UCSC Genome Browser custom track) |
| Alignm length: | 948 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 81 |
| Conread position: | 8-921 |
| Cow position: | chr14:13861557-13860622 (view UCSC Genome Browser custom track) |
| Alignm length: | 958 |
| Alignm identity: | 589 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-921 |
| Cow position: | chr14:16917765-16916808 (view UCSC Genome Browser custom track) |
| Alignm length: | 969 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 155 |
| Conread position: | 8-921 |
| Cow position: | chr14:19326296-19325340 (view UCSC Genome Browser custom track) |
| Alignm length: | 966 |
| Alignm identity: | 591 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 82, 62 |
| Conread position: | 8-933 |
| Cow position: | chr14:11151943-11150984 (view UCSC Genome Browser custom track) |
| Alignm length: | 975 |
| Alignm identity: | 592 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 124, 42 |
| Conread position: | 11-921 |
| Cow position: | chr14:2288225-2289172 (view UCSC Genome Browser custom track) |
| Alignm length: | 958 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 14-457 |
| Cow position: | chr14:38460486-38460017 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 15-391 |
| Cow position: | chr14:20705462-20705851 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 15-411 |
| Cow position: | chr14:45026985-45026575 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 109, 55 |
| Conread position: | 16-405 |
| Cow position: | chr14:49647470-49647069 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 19-410 |
| Cow position: | chr14:44889259-44888854 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 49 |
| Conread position: | 23-400 |
| Cow position: | chr14:43560212-43560603 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 23-410 |
| Cow position: | chr14:27989501-27989106 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 27-757 |
| Cow position: | chr14:7843785-7844534 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 473 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 112, 43 |
| Conread position: | 35-474 |
| Cow position: | chr14:50113356-50113822 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 303 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 62-893 |
| Cow position: | chr14:749587-748707 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 547 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 264 |
| Conread position: | 135-459 |
| Cow position: | chr14:39299844-39300183 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 149-541 |
| Cow position: | chr14:46036667-46036265 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 151-881 |
| Cow position: | chr14:17689236-17690007 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 478 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 175-400 |
| Cow position: | chr14:26868175-26867938 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 175-893 |
| Cow position: | chr14:9046969-9047728 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 494 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 313 |
| Conread position: | 176-400 |
| Cow position: | chr14:11636696-11636927 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 88 |
| Conread position: | 219-945 |
| Cow position: | chr14:23258240-23258964 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 460 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 229-869 |
| Cow position: | chr14:21047469-21046800 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 443 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 259-945 |
| Cow position: | chr14:40501093-40501784 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 435 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 311-945 |
| Cow position: | chr14:39321123-39321781 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 435 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 313-889 |
| Cow position: | chr14:30477057-30476455 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 386 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 69, 149 |
| Conread position: | 400-946 |
| Cow position: | chr14:21096530-21097090 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 370 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 528-930 |
| Cow position: | chr14:44077179-44076757 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 303 |
| Conread position: | 587-894 |
| Cow position: | chr14:5641723-5642031 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 28 |
| Conread position: | 591-946 |
| Cow position: | chr14:1735941-1735578 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 621-927 |
| Cow position: | chr14:41477554-41477858 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 181, 55 |
| Conread position: | 622-921 |
| Cow position: | chr14:12740434-12740130 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 195, 254 |
| Conread position: | 623-946 |
| Cow position: | chr14:39936374-39936689 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 190, 107 |
| Conread position: | 626-946 |
| Cow position: | chr14:25259609-25259935 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 210 |
| Conread position: | 645-926 |
| Cow position: | chr14:17732795-17732503 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 123, 150 |
| Conread position: | 691-945 |
| Cow position: | chr14:47918851-47918599 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 44 |
Show alignments to all cow chromosomes.