Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 1-397 |
| Cow position: | chr15:43293210-43292807 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 1-410 |
| Cow position: | chr15:8101411-8101838 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 2-398 |
| Cow position: | chr15:9431892-9432293 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 66 |
| Conread position: | 2-857 |
| Cow position: | chr15:2410739-2409864 (view UCSC Genome Browser custom track) |
| Alignm length: | 893 |
| Alignm identity: | 539 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 84, 66 |
| Conread position: | 2-893 |
| Cow position: | chr15:480540-481478 (view UCSC Genome Browser custom track) |
| Alignm length: | 952 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 7-881 |
| Cow position: | chr15:7546846-7547750 (view UCSC Genome Browser custom track) |
| Alignm length: | 917 |
| Alignm identity: | 546 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 117, 69 |
| Conread position: | 7-883 |
| Cow position: | chr15:13429785-13430707 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 8-262 |
| Cow position: | chr15:16189806-16189541 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-288 |
| Cow position: | chr15:43739295-43739005 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-297 |
| Cow position: | chr15:6551799-6551499 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-406 |
| Cow position: | chr15:20354515-20354102 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 78, 55 |
| Conread position: | 8-408 |
| Cow position: | chr15:12023463-12023875 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 8-410 |
| Cow position: | chr15:14580183-14579765 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-410 |
| Cow position: | chr15:24297157-24297574 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 8-410 |
| Cow position: | chr15:27747973-27748390 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 74, 149 |
| Conread position: | 8-411 |
| Cow position: | chr15:20405772-20405355 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 272 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-447 |
| Cow position: | chr15:33123345-33123809 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr15:7848313-7848806 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr15:10825436-10825928 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 321 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 8-475 |
| Cow position: | chr15:25205043-25204550 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 326 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr15:27635391-27635884 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-562 |
| Cow position: | chr15:6563141-6563709 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-707 |
| Cow position: | chr15:6153966-6153227 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 459 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-880 |
| Cow position: | chr15:21663778-21662860 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 569 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-881 |
| Cow position: | chr15:15345141-15344220 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 594 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-881 |
| Cow position: | chr15:20412562-20413458 (view UCSC Genome Browser custom track) |
| Alignm length: | 915 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-881 |
| Cow position: | chr15:25131918-25132840 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 565 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-893 |
| Cow position: | chr15:7564967-7565897 (view UCSC Genome Browser custom track) |
| Alignm length: | 947 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr15:18229028-18229959 (view UCSC Genome Browser custom track) |
| Alignm length: | 950 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr15:18265796-18264868 (view UCSC Genome Browser custom track) |
| Alignm length: | 948 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-893 |
| Cow position: | chr15:31586433-31585504 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 584 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-893 |
| Cow position: | chr15:36330494-36329566 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 830 |
| Conread position: | 8-893 |
| Cow position: | chr15:42944643-42943712 (view UCSC Genome Browser custom track) |
| Alignm length: | 940 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-930 |
| Cow position: | chr15:41786718-41785781 (view UCSC Genome Browser custom track) |
| Alignm length: | 967 |
| Alignm identity: | 603 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 11-410 |
| Cow position: | chr15:32844808-32844406 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 11-411 |
| Cow position: | chr15:52976922-52977338 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 281 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 11-475 |
| Cow position: | chr15:5939695-5939213 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 113, 57 |
| Conread position: | 15-329 |
| Cow position: | chr15:9394936-9395259 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 15-341 |
| Cow position: | chr15:7840273-7840612 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 290 |
| Conread position: | 15-400 |
| Cow position: | chr15:7270316-7270711 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 15-410 |
| Cow position: | chr15:42531891-42532301 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 72, 55 |
| Conread position: | 15-415 |
| Cow position: | chr15:30727273-30726863 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 48 |
| Conread position: | 15-883 |
| Cow position: | chr15:3153579-3152680 (view UCSC Genome Browser custom track) |
| Alignm length: | 928 |
| Alignm identity: | 575 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 133, 55 |
| Conread position: | 20-474 |
| Cow position: | chr15:7448815-7448350 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 23-841 |
| Cow position: | chr15:51219720-51220583 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 23-933 |
| Cow position: | chr15:44072446-44073383 (view UCSC Genome Browser custom track) |
| Alignm length: | 961 |
| Alignm identity: | 596 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 25-927 |
| Cow position: | chr15:443804-442858 (view UCSC Genome Browser custom track) |
| Alignm length: | 963 |
| Alignm identity: | 589 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 111, 45 |
| Conread position: | 30-445 |
| Cow position: | chr15:7552609-7553038 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 35-411 |
| Cow position: | chr15:3891556-3891948 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 35-881 |
| Cow position: | chr15:35751304-35750413 (view UCSC Genome Browser custom track) |
| Alignm length: | 902 |
| Alignm identity: | 549 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 36-881 |
| Cow position: | chr15:36941394-36940499 (view UCSC Genome Browser custom track) |
| Alignm length: | 901 |
| Alignm identity: | 554 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 47-384 |
| Cow position: | chr15:3837460-3837110 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 52-893 |
| Cow position: | chr15:31270864-31269977 (view UCSC Genome Browser custom track) |
| Alignm length: | 899 |
| Alignm identity: | 556 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 100-397 |
| Cow position: | chr15:11847635-11847931 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 147, 61 |
| Conread position: | 135-407 |
| Cow position: | chr15:280423-280149 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 135-410 |
| Cow position: | chr15:40820284-40820004 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 135-582 |
| Cow position: | chr15:25331524-25331979 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 135-893 |
| Cow position: | chr15:25070399-25069600 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 394 |
| Conread position: | 151-929 |
| Cow position: | chr15:4924277-4925089 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 498 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 158-410 |
| Cow position: | chr15:15650263-15650004 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 160-766 |
| Cow position: | chr15:23709392-23708749 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 415 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 48, 328 |
| Conread position: | 175-475 |
| Cow position: | chr15:16514203-16514517 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 175-900 |
| Cow position: | chr15:49449005-49448254 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 487 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 28, 141 |
| Conread position: | 181-893 |
| Cow position: | chr15:21636415-21637167 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 479 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 27, 347 |
| Conread position: | 205-942 |
| Cow position: | chr15:40330307-40329541 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 489 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 210-946 |
| Cow position: | chr15:20330216-20329470 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 478 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 258-904 |
| Cow position: | chr15:13980535-13981221 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 428 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 223 |
| Conread position: | 278-893 |
| Cow position: | chr15:5641341-5640697 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 410 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 252 |
| Conread position: | 283-922 |
| Cow position: | chr15:27727227-27726568 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 423 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 79, 57 |
| Conread position: | 289-545 |
| Cow position: | chr15:13612440-13612181 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 202 |
| Conread position: | 439-942 |
| Cow position: | chr15:27760130-27759604 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 456-941 |
| Cow position: | chr15:30611628-30612135 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 496-787 |
| Cow position: | chr15:9530292-9530010 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 605-871 |
| Cow position: | chr15:21563861-21564128 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 196 |
| Conread position: | 621-946 |
| Cow position: | chr15:12721034-12721356 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 79 |
| Conread position: | 638-946 |
| Cow position: | chr15:46105862-46106174 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 137, 145 |
| Conread position: | 643-894 |
| Cow position: | chr15:17862274-17862523 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 86, 60 |
| Conread position: | 646-871 |
| Cow position: | chr15:40729902-40729669 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 131, 80 |
| Conread position: | 666-866 |
| Cow position: | chr15:14718486-14718689 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 666-943 |
| Cow position: | chr15:14606646-14606363 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 675-946 |
| Cow position: | chr15:20155511-20155233 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 676-894 |
| Cow position: | chr15:14618700-14618921 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 694-947 |
| Cow position: | chr15:12770252-12770510 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 93, 136 |
Show alignments to all cow chromosomes.