Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 1-945 |
| Cow position: | chr17:36000505-35999553 (view UCSC Genome Browser custom track) |
| Alignm length: | 984 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 55 |
| Conread position: | 2-881 |
| Cow position: | chr17:4062513-4063435 (view UCSC Genome Browser custom track) |
| Alignm length: | 934 |
| Alignm identity: | 565 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 3-443 |
| Cow position: | chr17:9901175-9901623 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 78, 174 |
| Conread position: | 4-842 |
| Cow position: | chr17:20414361-20413518 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 543 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 5-893 |
| Cow position: | chr17:2264368-2265295 (view UCSC Genome Browser custom track) |
| Alignm length: | 945 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 71 |
| Conread position: | 8-356 |
| Cow position: | chr17:19979942-19979586 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-359 |
| Cow position: | chr17:24784355-24784713 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 60 |
| Conread position: | 8-410 |
| Cow position: | chr17:15327469-15327874 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-411 |
| Cow position: | chr17:40485-40904 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-411 |
| Cow position: | chr17:147110-147530 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 8-411 |
| Cow position: | chr17:3742343-3742762 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-445 |
| Cow position: | chr17:16903069-16903516 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 8-464 |
| Cow position: | chr17:14214854-14214373 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-475 |
| Cow position: | chr17:8210837-8211328 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-475 |
| Cow position: | chr17:13418583-13419071 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-476 |
| Cow position: | chr17:18593414-18593904 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 307 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 8-555 |
| Cow position: | chr17:5307556-5306995 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-881 |
| Cow position: | chr17:2245863-2244971 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 567 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-883 |
| Cow position: | chr17:1655566-1654664 (view UCSC Genome Browser custom track) |
| Alignm length: | 925 |
| Alignm identity: | 564 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 8-893 |
| Cow position: | chr17:15141150-15140233 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 580 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 8-893 |
| Cow position: | chr17:15437978-15438897 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-893 |
| Cow position: | chr17:15709810-15708887 (view UCSC Genome Browser custom track) |
| Alignm length: | 943 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-921 |
| Cow position: | chr17:6262045-6262991 (view UCSC Genome Browser custom track) |
| Alignm length: | 968 |
| Alignm identity: | 590 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 116, 75 |
| Conread position: | 11-830 |
| Cow position: | chr17:23322241-23321380 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 543 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 11-893 |
| Cow position: | chr17:27792592-27791676 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 59 |
| Conread position: | 14-842 |
| Cow position: | chr17:11785082-11785938 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 56 |
| Conread position: | 14-893 |
| Cow position: | chr17:29825776-29824855 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 15-300 |
| Cow position: | chr17:7561763-7561472 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 15-352 |
| Cow position: | chr17:15649102-15649438 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 53 |
| Conread position: | 15-396 |
| Cow position: | chr17:136830-137229 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 15-400 |
| Cow position: | chr17:35300343-35299948 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 109, 66 |
| Conread position: | 15-881 |
| Cow position: | chr17:25738487-25739391 (view UCSC Genome Browser custom track) |
| Alignm length: | 919 |
| Alignm identity: | 565 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 72, 55 |
| Conread position: | 16-475 |
| Cow position: | chr17:43146384-43145901 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 16-843 |
| Cow position: | chr17:6070728-6071590 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 533 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 36-922 |
| Cow position: | chr17:18100871-18099938 (view UCSC Genome Browser custom track) |
| Alignm length: | 943 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 158-930 |
| Cow position: | chr17:3550913-3550119 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 507 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 72, 216 |
| Conread position: | 161-465 |
| Cow position: | chr17:4297253-4297567 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 217-360 |
| Cow position: | chr17:21618597-21618452 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 90 |
| Conread position: | 224-586 |
| Cow position: | chr17:12130366-12130725 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 156, 26 |
| Conread position: | 226-945 |
| Cow position: | chr17:38760094-38759374 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 474 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 267-830 |
| Cow position: | chr17:37695-38281 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 382 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 116, 373 |
| Conread position: | 301-843 |
| Cow position: | chr17:18849975-18850542 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 373 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 496-946 |
| Cow position: | chr17:22500079-22500545 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 595-906 |
| Cow position: | chr17:44608156-44607841 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 179, 26 |
| Conread position: | 618-787 |
| Cow position: | chr17:29820962-29821131 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 618-830 |
| Cow position: | chr17:20703344-20703133 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 196, 18 |
Show alignments to all cow chromosomes.