Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8053L10.5 |
| Conread position: | 1-271 |
| Cow position: | chr18:32725901-32725631 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 123, 62 |
| Conread position: | 1-460 |
| Cow position: | chr18:45399561-45400032 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 2-416 |
| Cow position: | chr18:16146617-16146217 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 68, 83 |
| Conread position: | 3-464 |
| Cow position: | chr18:38090951-38090477 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 133, 39 |
| Conread position: | 8-294 |
| Cow position: | chr18:27835685-27835388 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 8-297 |
| Cow position: | chr18:19354762-19355061 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-339 |
| Cow position: | chr18:38160460-38160116 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 8-384 |
| Cow position: | chr18:30762559-30762170 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-400 |
| Cow position: | chr18:1956770-1956362 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-410 |
| Cow position: | chr18:36115038-36114634 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 8-410 |
| Cow position: | chr18:36511022-36511433 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-411 |
| Cow position: | chr18:5201925-5202344 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 8-411 |
| Cow position: | chr18:16080924-16081343 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-447 |
| Cow position: | chr18:3755343-3755807 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr18:18215907-18216400 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 332 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-475 |
| Cow position: | chr18:51344510-51344996 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 53 |
| Conread position: | 8-475 |
| Cow position: | chr18:51662548-51663041 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 8-555 |
| Cow position: | chr18:26244176-26243622 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-555 |
| Cow position: | chr18:55417126-55417683 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-731 |
| Cow position: | chr18:37701090-37700329 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 481 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 8-766 |
| Cow position: | chr18:11272444-11271645 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 469 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 8-881 |
| Cow position: | chr18:5535393-5536290 (view UCSC Genome Browser custom track) |
| Alignm length: | 918 |
| Alignm identity: | 555 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-881 |
| Cow position: | chr18:14418372-14419295 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 561 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 8-893 |
| Cow position: | chr18:604054-603135 (view UCSC Genome Browser custom track) |
| Alignm length: | 936 |
| Alignm identity: | 572 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 8-893 |
| Cow position: | chr18:52630845-52629929 (view UCSC Genome Browser custom track) |
| Alignm length: | 934 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 60 |
| Conread position: | 8-921 |
| Cow position: | chr18:16174205-16173255 (view UCSC Genome Browser custom track) |
| Alignm length: | 961 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-921 |
| Cow position: | chr18:25922791-25923742 (view UCSC Genome Browser custom track) |
| Alignm length: | 961 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-921 |
| Cow position: | chr18:28929187-28928237 (view UCSC Genome Browser custom track) |
| Alignm length: | 967 |
| Alignm identity: | 599 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 8-921 |
| Cow position: | chr18:29864206-29863246 (view UCSC Genome Browser custom track) |
| Alignm length: | 970 |
| Alignm identity: | 594 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 8-925 |
| Cow position: | chr18:23801424-23802386 (view UCSC Genome Browser custom track) |
| Alignm length: | 972 |
| Alignm identity: | 595 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 8-925 |
| Cow position: | chr18:28969885-28968926 (view UCSC Genome Browser custom track) |
| Alignm length: | 972 |
| Alignm identity: | 594 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 8-936 |
| Cow position: | chr18:17322806-17323754 (view UCSC Genome Browser custom track) |
| Alignm length: | 974 |
| Alignm identity: | 587 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 17 |
| Conread position: | 8-945 |
| Cow position: | chr18:24713567-24712600 (view UCSC Genome Browser custom track) |
| Alignm length: | 980 |
| Alignm identity: | 557 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 11-893 |
| Cow position: | chr18:22183120-22182210 (view UCSC Genome Browser custom track) |
| Alignm length: | 934 |
| Alignm identity: | 577 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 11-893 |
| Cow position: | chr18:32165523-32164602 (view UCSC Genome Browser custom track) |
| Alignm length: | 934 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 11-893 |
| Cow position: | chr18:51460436-51459512 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 588 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 65 |
| Conread position: | 14-843 |
| Cow position: | chr18:40483414-40484278 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 548 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 110, 62 |
| Conread position: | 15-536 |
| Cow position: | chr18:18476392-18475861 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 149 |
| Conread position: | 15-555 |
| Cow position: | chr18:33138609-33138093 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 359 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 15-730 |
| Cow position: | chr18:16092224-16092982 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 481 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 16-381 |
| Cow position: | chr18:23702673-23702298 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 60 |
| Conread position: | 16-536 |
| Cow position: | chr18:6459280-6459804 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 17-459 |
| Cow position: | chr18:36209941-36209493 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 20-579 |
| Cow position: | chr18:9356465-9355904 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 363 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 28-518 |
| Cow position: | chr18:28674850-28674351 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 33-359 |
| Cow position: | chr18:391049-390714 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 130 |
| Conread position: | 35-883 |
| Cow position: | chr18:51484023-51484912 (view UCSC Genome Browser custom track) |
| Alignm length: | 901 |
| Alignm identity: | 551 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 36-359 |
| Cow position: | chr18:5680803-5681129 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 43-788 |
| Cow position: | chr18:10221464-10222250 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 497 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 135-893 |
| Cow position: | chr18:29070957-29071750 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 470 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 335 |
| Conread position: | 146-893 |
| Cow position: | chr18:47744295-47745082 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 503 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 146-925 |
| Cow position: | chr18:31381607-31382408 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 513 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 175-411 |
| Cow position: | chr18:39293450-39293204 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 203 |
| Conread position: | 177-945 |
| Cow position: | chr18:37540287-37541096 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 147 |
| Conread position: | 203-400 |
| Cow position: | chr18:6059808-6059606 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 177 |
| Conread position: | 207-565 |
| Cow position: | chr18:28211182-28210815 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 207-771 |
| Cow position: | chr18:45657595-45657019 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 5 |
| Conread position: | 207-893 |
| Cow position: | chr18:11869095-11869816 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 447 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 70, 34 |
| Conread position: | 208-464 |
| Cow position: | chr18:25957376-25957650 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 248-511 |
| Cow position: | chr18:40083323-40083585 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 258-943 |
| Cow position: | chr18:23855174-23855848 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 446 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 276-815 |
| Cow position: | chr18:2643064-2642497 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 360 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 265 |
| Conread position: | 293-562 |
| Cow position: | chr18:37354784-37355058 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 311-926 |
| Cow position: | chr18:44189996-44190607 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 412 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 82, 73 |
| Conread position: | 327-574 |
| Cow position: | chr18:32739348-32739100 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 468-946 |
| Cow position: | chr18:51330756-51331229 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 344, 20 |
| Conread position: | 612-941 |
| Cow position: | chr18:51032998-51032660 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 622-946 |
| Cow position: | chr18:14423320-14423651 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 151, 89 |
| Conread position: | 624-868 |
| Cow position: | chr18:28268862-28268614 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 166, 143 |
| Conread position: | 627-946 |
| Cow position: | chr18:39812575-39812255 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 97 |
| Conread position: | 628-886 |
| Cow position: | chr18:14152252-14152516 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 162, 171 |
| Conread position: | 628-946 |
| Cow position: | chr18:51246724-51247047 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 162, 113 |
| Conread position: | 629-946 |
| Cow position: | chr18:51300320-51300643 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 110, 169 |
| Conread position: | 664-945 |
| Cow position: | chr18:14816309-14816595 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 138 |
| Conread position: | 666-946 |
| Cow position: | chr18:37874679-37874385 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 676-942 |
| Cow position: | chr18:35739712-35739985 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 71, 127 |
| Conread position: | 690-936 |
| Cow position: | chr18:41260280-41260525 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 127, 102 |
Show alignments to all cow chromosomes.